AlignACE 3.0 10/20/99 AlignACE2 -i BS/BS_sum_all027_100.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944256117 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 yabH 147 similar to hypothetical proteins #1 spoVG 193 spoVG #2 gcaD 192 UDP-N-acetylglucosamine pyrophosphorylase #3 prs 22 phosphoribosyl pyrophosphate synthetase #4 ctc 84 general stress protein #5 spoVC 106 thermosensitive mutant blocks spore coat formation (stage V sporulation) #6 yacA 103 similar to cell-cycle protein #7 ftsH 97 cell-division protein and general stress protein (class III heat-shock) #8 yacB 194 similar to hypothetical proteins #9 pabB 166 para-aminobenzoate synthase (subunit A) #10 yacF 23 similar to transcriptional regulator (nitrogen regulation protein) #11 yjoB 148 similar to cell-division protein FtsH homolog #12 spoVK 300 alternate gene name: spoVJ; disruption leads to the production of immature spores (stage V sporulation) #13 yurH 300 similar to N-carbamyl-L-amino acid amidohydrolase Motif 1 TGTGACCCGGGGGACGTGCTGTTCCCTGGTTTTTTTATTTTGGA 0 13 1 AAAGTGATTCTGGGAGAGCCGGGATCACTTTTTTATTTACCTTA 1 15 1 TTATGTCAGCCCTTTCAGCAGTCCTTGCTTTTTGGTTATTTT 2 8 0 GCTGACATAAGCCTTTTGCCGGCGGTCCTTTTTTAATTCTGATT 2 42 1 TAAGGCGTAACCCTCCCGCGGTTACGTCTTTTGTGCTAGAATGA 5 15 1 ATGGTGCAAACTGCAGAGCCTATGCTTCTTCTTTGCTTG 6 5 1 CTTCTTCTTTGCTTGGAGGGGTTGAAAGTGTTAGGATATGAATA 6 34 1 TCGGCAGCCTGCTTCCGAGATGGTTATTGTTTGTATTGGA 7 6 1 TAAAAAAACTGCCAGCGTCAGCCGGCAGTTTTTTTAGAAAGAAA 8 15 0 GCCAAAACTCCCGGTTCGCCGGGAGTTTTTTTATATTTCGTGCA 9 15 1 GCATCAAATATGCCATGTCTGCGACGAATGTTATTCTTGGAAGA 9 56 1 ACTTCAGGTATCTTAGGGCGGGTAATACGTTTCGTACAAAAATC 12 19 1 GTATTTCTCGGGAAAGCGCAGGATTCCTTATTGTTCCCGAAAAA 12 184 1 TCCTGTTTTTGCGGGCTGCCGGCATTTCTGTTTTCATCCGTTCC 13 11 1 GCTCTTGCTGGCTCTCTTCCTTACCGTGTTTTCTTTTGACCTTT 13 115 1 ** * ** * * ** * MAP Score: 15.6379 Motif 2 TAAATAAAAAAGTGATCCCGGCTCTCCCAGAA 1 22 0 GAATTAAAAAAGGACCGCCGGCAAAAGGCTTA 2 49 0 CCTTAGTCACATAACTCCCGTCTTCATAAACG 5 73 0 TCTTTCTAAAAAAACTGCCGGCTGACGCTGGC 8 17 1 TTTACATAAAAAAACTGCCAGCGTCAGCCGGC 8 33 0 AAAAAGCCAAAACTCCCGGTTCGCCGGGAG 9 8 1 GAAATATAAAAAAACTCCCGGCGAACCGGGAG 9 22 0 GGATGAAAACAGAAATGCCGGCAGCCCGCAAA 13 18 0 * ********* MAP Score: 14.3998 Motif 3 TGTATTTATATCCAAAATAAAAAAACCAGGG 0 36 0 ATAAGGTAAATAAAAAAGTGATCCCGGCTCT 1 29 0 AATATTTTTTGAAAAAATAGGATATAGTTAC 1 91 0 CAACTAAGTTTGAAAAATCAGAATTAAAAAA 2 70 0 GGCAGTTTTTTTAGAAAGAAAGCGAA 8 5 0 TAGAATGTTTGTAAAAAGTAAAGTAGAGAAA 8 150 1 AGAGAAACTATTCAAAAGTGGTGATAGAGG 8 174 1 TGTTGTTAGTGAAAAAAGTGAATTTCTCTTC 9 95 0 TGCTTTACAATTAAAAACAAGTAAAAAAGAA 9 127 1 TAAAAACAAGTAAAAAAGAAAATAGAGGAAT 9 138 1 TCCTCCATATGTAAAAATAAATGGTGCAATG 11 17 1 GCCCGTTGTATGAAAAAGAAATAATGAGAAA 12 64 1 AAAGAAATAATGAGAAAGAAGCTCACTATAA 12 78 1 GACAAAATGATTAAAAACAAAATCTCATGGT 12 115 1 GTGAATACAATAAGAAATAAAGTATTTCTCG 12 163 1 TATTGTTCCCGAAAAAAGCAATTGTTTCGAC 12 212 1 CCGGCAGCCCGCAAAAACAGGAC 13 2 0 CGGAACGGATGAAAACAGAAATGCCGGCAGC 13 25 0 TGATGTAAAGGTCAAAAGAAAACACGGTAAG 13 134 0 ATACTGTGGCTAAAAAATAAACGTTTTTTTG 13 206 1 * ********* MAP Score: 12.9554 Motif 4 ATATAAATACATAATGGGCTGAATATGGATATG 0 56 1 GTTTAGATGGAGAAGTAGGTGAAAGCT 0 130 1 AAATATTTTAAAAACGAGCAGGATTTCAGAAAA 1 115 1 TTATATAGGGAAAAGGTGGTGAACTACT 1 175 1 AACGACAAGAGGATGGTGCTGAAT 4 70 1 CTTTTGTGCTAGAATGAGAAGAATTATAGCCCG 5 42 1 TGTCCTCCTCACAATGAGCAGGTATTTTAAAGA 6 78 0 TTTGTAAAAAGTAAAGTAGAGAAACTATTCAAA 8 157 1 AGAAACTATTCAAAAGTGGTGATAGAGG 8 176 1 AACAAATGAAAGGAGGAGAAAAA 10 7 1 TTATTTTTACATATGGAGGAGATCATA 11 4 0 TCTTTTTCATACAACGGGCTGATTTTTGTACGA 12 50 0 TGTATTCACGGACATGGGGTGGACAAACCATGA 12 139 0 GTATTTCTCGGGAAAGCGCAGGATTCCTTATTG 12 184 1 TATAGAGAGAACAGAGAGGTGAAG 12 286 1 * ** * ****** MAP Score: 11.1643 Motif 5 TATATCCAAAATAAAAAAACCAGGGAACAGCACGT 0 26 0 TAAGAAAAGTGATTCTGGGAGAGCCGGGA 1 4 1 GCAGGATTTCAGAAAAAATCGTGGAATTGATACAC 1 132 1 TTCCCTATATAAAAGCATTAGTGTATCAATTCCAC 1 152 0 TTGAAAAATCAGAATTAAAAAAGGACCGCCGGCAA 2 57 0 CCTTGAAATCAGAAGATATTTAGGATATATTTTTC 2 136 1 TTCTATGGATAAAAGGGATATTGGAGGCCAATAA 2 168 1 TTCAACCCCTCCAAGCAAAGAAGAAGCATAGGCTC 6 25 0 AATGTTTGTAAAAAGTAAAGTAGAGAAACTATTCA 8 153 1 ACAATTAAAAACAAGTAAAAAAGAAAATAGAGGAA 9 133 1 AACAAATGAAAGGAGGAGAAAAA 10 2 1 TCCATATGTAAAAATAAATGGTGCAATGAAATCCT 11 20 1 CGTTCACAAAACATGAAATGGAGTATAAAC 11 128 1 CGTTGTATGAAAAAGAAATAATGAGAAAGAAGCTC 12 67 1 CGTGAATACAATAAGAAATAAAGTATTTCTCGGGA 12 162 1 TTCGGGAACAATAAGGAATCCTGCGCTTTCCCGAG 12 190 0 TTTCATATGAACAAGCTAAGCTGGAGAGGCGATGT 13 59 0 * *** *** ** * MAP Score: 11.1105 Motif 6 CCAGCGTCAGCCGGCAGTTTTTTTAGAAAGA 8 17 0 AACAGAAATGCCGGCAGCCCGCAAAAACAGG 13 12 0 AAGCCTTTTGCCGGCGGTCCTTTTTTAATTC 2 50 1 TTTCTGAAATCCTGCTCGTTTTTAAAATATT 1 116 0 TTTCATACAACGGGCTGATTTTTGTACGAAA 12 48 0 TCCCGGTTCGCCGGGAGTTTTTTTATATTTC 9 23 1 TCCCGGCGAACCGGGAGTTTTGGCTTTTT 9 8 0 CTTTAAAATACCTGCTCATTGTGAGGAGGAC 6 79 1 AAAAGTGATCCCGGCTCTCCCAGAATCACTT 1 16 0 CCGGCTGACGCTGGCAGTTTTTTTATGTAAA 8 34 1 AATAAGGAATCCTGCGCTTTCCCGAGAAATA 12 185 0 TACACGATCAGCGGCTCATTTGTAAACAAAT 8 111 0 TCGGCAGCCTGCTTCCGAGAT 7 0 1 GATTGGCTCAGCTGCGGCTTTTACAATCATC 8 66 1 AAGCATAGGCTCTGCAGTTTGCACCAT 6 6 0 TTCGCTCTTGCTGGCTCTCTTCCTTACCGTG 13 112 1 ACCCGGGGGACGTGCTGTTCCCTGGTTTTTT 0 17 1 GAACTATCATGTTGCTCCTTCTATAATGAAG 13 251 1 ******* *** MAP Score: 9.19847 Motif 7 CTTATCGTTATGGGTATTGTTTGTAATAGGACAAC 4 32 1 CTTGGAGGGGTTGAAAGTGTTAGGATATGAATATC 6 45 1 TTAAAATACCTGCTCATTGTGAGGAGGACATT 6 81 1 GCTTCCGAGATGGTTATTGTTTGTATTGGAATGAT 7 20 1 AACATAGTTGTGCTTACTGTGGGAGGAGGTAAGGA 7 72 1 TGTATGGTATTGTAGAATGTTTGTAAAAAGTAAAG 8 138 1 TTCAAGCGGATGCCGATTGTGACAAACGCCTATCA 12 246 0 GGTTGCTGGATGGATACTGTGGCTAAAAAATAAAC 13 193 1 AACGTTTTTTTGGTTAATCTGTCAATGAACTATCA 13 225 1 *** * **** * * MAP Score: 6.55275 Motif 8 AAGCTTTATGACCTAATTGTGTAACTATATC 1 71 1 TTTTCTGAAATCCTGCTCGTTTTTAAAATAT 1 117 0 GAGGTTTAAATCCTTATCGTTATGGGTATTG 4 20 1 TTAAAATACCTGCTCATTGTGAGGAGGACAT 6 81 1 GCTTCCGAGATGGTTATTGTTTGTATTGGAA 7 20 1 AACATAGTTGTGCTTACTGTGGGAGGAGGTA 7 72 1 ACAAATGAGCCGCTGATCGTGTATGGTATTG 8 119 1 AGCGCAGGATTCCTTATTGTTCCCGAAAAAA 12 198 1 TTCAAGCGGATGCCGATTGTGACAAACGCCT 12 250 0 CTGGCTCTCTTCCTTACCGTGTTTTCTTTTG 13 122 1 **** ****** MAP Score: 6.13044 Motif 9 GGGGGACGTGCTGTTCCCTGGTTTTTTTATTTTGGATA 0 21 1 AATTGTGTAACTATATCCTATTTTTTCAAAAAATATTT 1 85 1 ATTAGTGTATCAATTCCACGATTTTTTCTGAAATCCTG 1 133 0 AACCCTCCCGCGGTTACGTCTTTTGTGCTAGAATGAGA 5 23 1 TGCCGGCTGACGCTGGCAGTTTTTTTATGTAAATGATT 8 32 1 TGAATAGTTTCTCTACTTTACTTTTTACAAACATTCTA 8 150 0 TGTATCATTCCTCTATTTTCTTTTTTACTTGTTTTTAA 9 137 0 GTTTATACTCCATTTCATGTTTTGTGAACGTTATATA 11 121 0 TAGTGAGCTTCTTTCTCATTATTTCTTTTTCATACAAC 12 68 0 ATTAAAAACAAAATCTCATGGTTTGTCCACCCCATGTC 12 124 1 TGGCTCTCTTCCTTACCGTGTTTTCTTTTGACCTTTAC 13 123 1 * * * * ***** * MAP Score: 5.02869 Motif 10 GTACTTCAAATGTGATACAATGTTCATACTTATGTTTAGATGGA 0 97 1 TTATTTACCTTATGCCCGAAATGAAAGCTTTATGACCTAATTGT 1 47 1 AATTCCACGATTTTTTCTGAAATCCTGCTCGTTTTTAAAATATT 1 116 0 CATAGAAAAATATATCCTAAATATCTTCTGATTTCAAGGAGACT 2 131 0 TTCTTCTCATTCTAGCACAAAAGACGTAACCGCGGGAGGGTTAC 5 21 0 AGGATATGAATATCTTTAAAATACCTGCTCATTGTGAGGAGGAC 6 66 1 TTCGCTTTCTTTCTAAAAAAACTGCCGGCTGACGCTGGCAG 8 7 1 GAGCCAATCATTTACATAAAAAAACTGCCAGCGTCAGCCGGCAG 8 31 0 GGTATCGATTTGTTTACAAATGAGCCGCTGATCGTGTATGGTAT 8 104 1 ATGCACGAAATATAAAAAAACTCCCGGCGAACCGGGAGTTTTGG 9 16 0 GGGTAATACGTTTCGTACAAAAATCAGCCCGTTGTATGAAAAAG 12 38 1 ATGATAGGCGTTTGTCACAATCGGCATCCGCTTGAATATCATAT 12 245 1 * * *** * ** ** MAP Score: 4.6504 Motif 11 ATTATGTATTTATATCCAAAATAAAAAAAC 0 41 0 ACAGGATGAACATATCCATATTCAGCCCAT 0 69 0 ATTGTGTAACTATATCCTATTTTTTCAAAA 1 86 1 CATAGAAAAATATATCCTAAATATCTTCTG 2 145 0 CAATATCCCTTTTATCCATAGAAAAATATA 2 161 0 TTTCGAGGTTTAAATCCTTATCGTTATGGG 4 16 1 TAAAGATATTCATATCCTAACACTTTCAAC 6 54 0 ********** MAP Score: 2.07795 Motif 12 ATAAATACATAATGGGCTGAATATGGATATGTTCAT 0 58 1 AATGCTTTTATATAGGGAAAAGGTGGTGAACTACT 1 168 1 TCTATGGATAAAAGGGATATTGGAGGCCAATAA 2 169 1 ATCCTTATCGTTATGGGTATTGTTTGTAATAGGACA 4 29 1 CTAAAACGACAAGAGGATGGTGCTGAAT 4 66 1 CCTGCTTCCGAGATGGTTATTGTTTGTATTGGAATG 7 17 1 CTAAAAAAACTGCCGGCTGACGCTGGCAGTTTTTTT 8 22 1 TTTTTCATACAACGGGCTGATTTTTGTACGAAACGT 12 45 0 TATGATATTCAAGCGGATGCCGATTGTGACAAACGC 12 252 0 AGTTGTGACATGTAGGGTGTATCTGGTTGCTGGATG 13 169 1 ** ** ** * *** MAP Score: 1.68594