AlignACE 3.0 10/20/99 AlignACE2 -i BS/BS_sum_all039_300.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944257047 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 ycgI 166 ycgI #1 nadE 139 NH3-dependent NAD+ synthetase #2 ydbP 174 similar to thioredoxin #3 spoVK 300 alternate gene name: spoVJ; disruption leads to the production of immature spores (stage V sporulation) #4 ynbA 220 similar to GTP-binding protein protease modulator #5 obg 33 GTPase activity #6 spo0B 300 sporulation initiation phosphoprotein #7 rplU 146 ribosomal protein L21 (BL20) #8 spoIVFA 150 inhibitor of SpoIVFB #9 minC 52 minC #10 mreC 30 cell-shape determining protein #11 mreB 90 cell-shape determining protein #12 ysxA 36 similar to DNA repair protein #13 maf 152 maf #14 spoIIB 133 spoIIB #15 comC 139 DNA-binding protein #16 folC 59 folyl-polyglutamate synthetase #17 valS 300 valyl-tRNA synthetase #18 trxA 300 thioredoxin #19 ytpP 234 similar to thioredoxin H1 #20 yuiE 157 similar to leucyl aminopeptidase #21 ywlF 156 alternate gene name: ipc-32d; similar to ribose 5-phosphate epimerase (pentose phosphate) #22 ywlE 75 alternate gene name: ipc-31d; similar to protein-tyrosine-phosphatase #23 ywlD 78 alternate gene name: ipc-30d; similar to hypothetical proteins #24 ywlC 156 alternate gene name: ipc-29d; similar to hypothetical proteins #25 ywlB 66 alternate gene name: ipc-28d #26 spoIIR 140 alternate gene name: ipc-27d, csfX #27 yyaF 126 similar to hypothetical proteins #28 yyaE 300 similar to formate dehydrogenase Motif 1 AAAGGAGAACGGAAAAACCGCTTTTTACAA 0 40 1 TAATATAAAATAAAAAGGAATTACATACAA 2 126 0 AAAATGGCATTGAAAAGGAGATGTGACAT 2 155 1 GCCCGTTGTATGAAAAAGAAATAATGAGAA 3 64 1 GACATGGGGTGGACAAACCATGAGATTTTG 3 132 0 TATTGTTCCCGAAAAAAGCAATTGTTTCGA 3 212 1 TCGATTGCTTTGAAAAGGCGGAAATACGAG 4 41 0 CCAAAGCCAGAAAAAAGGAACATGATATTT 6 175 1 GATATTTCTGGGAAAAACAATTGTTTTTCT 6 198 1 AGGCTTTGTTAGAAAAACAATTGTTTTTCC 6 208 0 GAGAAGAATCTGACAAAGCATATGCTGTGT 8 25 1 GTTTAGTCAAGAACAAAGCAGGCAAAAACA 8 67 0 TATTTGCCATGGACAAGACATATGATGTAC 8 101 1 TTAATTCGACGAAAAAAAAGTG 11 2 0 GGGAAGGGAAAGAAAAGGAGTGC 12 23 1 GGTTTGCTTAAGAAAAAAAGATACTCGTTT 13 115 0 AACGTTTTTTGGACAAGGCGACAAAAGTCT 14 28 1 ACAGGCAAAGAAAAAAAGAACAAGACTTTT 14 50 0 GTGTGTAGCATGAAAAGCCGACAAGAACGG 14 86 1 TTTTACACATGAAAAAAACGGCAGAATCTT 15 38 0 TGAAAAGCCGGGGCGGTTTC 16 0 1 CTCTTTTATAAGACAAGGCGGTTTCTCTAG 16 29 0 GGAAGAGTACAAAAAAGGCGCATGCAGAGA 17 44 1 GGCTGAGAACGAAAAAAGAGCTCTTCATCC 17 254 0 TTTTAAAACCTGAAAAAGAGCGCCGGCATG 18 10 0 TTTGTGTTTTAAAAAAAGAGCATATCCCAT 18 154 1 TGTTTCAAAAGAAAAAAGCAAGTCTTAGAC 20 43 1 CACGCTGGGAGGAAAAGCAG 21 146 1 TATATATGAAGAAAAAAGAAACGGCGACTT 22 29 0 ACGCATAGGCTAAAAAAGCGGGGCGTGTCC 23 41 1 GCCCTATTATGGACAAGGAGAGCCTGGGAT 26 85 0 ATAGGGCTAGAAACAAAGCACGGAGAGGAA 26 108 1 GAGGTTCACTGGAAAAGACAAGCTGACAAA 27 40 0 TCGTAGAAATGAAAAAACCGCATCCATGCG 28 84 1 ACCTTCTATATGAAAAAGCATGAGTGTCGG 28 265 0 ********** MAP Score: 34.7125 Motif 2 TCAAATGGATGTTCCTTTCTTTTGCATATTG 4 116 0 TCTAAGACTTGCTTTTTTCTTTTGAAACACG 20 41 0 GAAATATCATGTTCCTTTTTTCTGGCTTTGG 6 175 0 CCTTTTGGCTGGTCTTTTTTTGT 0 153 1 CAAAAGTCTTGTTCTTTTTTTCTTTGCCTGT 14 49 1 AATGGGATATGCTCTTTTTTTAAAACACAAA 18 154 0 CGAAGTCGCCGTTTCTTTTTTCTTCATATAT 22 27 1 TGCTGTGTCAGGTTTTTTTTTGTTTTTGCCT 8 47 1 ATTGGAACAGGCTTCTTTCTCGGTTCCAGCA 0 76 0 ATTATAGTGAGCTTCTTTCTCATTATTTCTT 3 79 0 AGATTCTGCCGTTTTTTTCATGTGTAAAATT 15 39 1 GCATGGATGCGGTTTTTTCATTTCTACGATA 28 82 0 GATACCTGAAGTGTTTTTCTT 3 0 0 ATGTATGTATCTTCCTTTCTTAAAGCAAAAA 11 69 0 GGGATGAAGAGCTCTTTTTTCGTTCTCAGCC 17 253 1 CCCGTTTTTGCGTTCTTTCTTCCAATCTATG 25 37 0 AAACGAGTATCTTTTTTTCTTAAGCAAACCC 13 115 1 CGGCGACTTCGTTTCTTTTATTGGTATA 22 7 0 TTAGTGACAGGCTTTTTTTATTTTGTCATGA 13 36 1 CTCTCTGCATGCGCCTTTTTTGTACTCTTCC 17 44 0 ATGATGACTGGAGTTTTTTTTGCAATATGCG 6 11 1 GTTTTTGCCTGCTTTGTTCTTGACTAAACCG 8 68 1 GTTTTTGAGAGGTCTGTTTTTTGCTCGTATT 4 18 1 CGCGGTACCACCTTTTTTCATGAACTCAATC 17 199 0 ACCATATGATGTGCTTTTCACTATATTCTAC 21 59 0 CCGTTCTTGTCGGCTTTTCATGCTACACACT 14 85 0 * ********* MAP Score: 27.8523 Motif 3 GGCGACAAAAGTCTTGTTCTTTTTTTCTTTGCCTGT 14 44 1 GGTTGAATGGGATATGCTCTTTTTTTAAAACACAAA 18 154 0 CCTCATGCTTGACTAGTACTTTTTTTAGTTTTCTTT 28 210 0 CTCAGTTTTTGAGAGGTCTGTTTTTTGCTCGTATTT 4 14 1 GATGATGACTGGAGTTTTTTTTGCAATATGCG 6 6 1 TCGTCCTTTAGTGACAGGCTTTTTTTATTTTGTCAT 13 29 1 TGAAAAAAACGGCAGAATCTTTTTTTGATTCTGCCG 15 23 0 AAAGGAGAACGGAAAAACCGCTTTTTACAATTGCGA 0 40 1 TTACAGGGATGAAGAGCTCTTTTTTCGTTCTCAGCC 17 248 1 AGCATATGCTGTGTCAGGTTTTTTTTTGTTTTTGCC 8 41 1 AAAGGATTTTATCTTTTTTTGACGAAATGA 9 4 1 GCTGAAAAATTTGACGAACGTTTTTTGGACAAGGCG 14 12 1 GATTCCCTTTTGGCTGGTCTTTTTTTGT 0 148 1 TAAGTATAGTGGAAAGAATGTTTTTCCTATTATACC 20 88 1 ATCATGTGTCGAAACAATTGCTTTTTTCGGGAACAA 3 214 0 GGATTGGCAAGCTGAAAATGCTTTTTTGTCAGCTTG 27 16 1 CATGCCGGCGCTCTTTTTCAGGTTTTAA 18 2 1 AAGAAACGAAGTCGCCGTTTCTTTTTTCTTCATATA 22 21 1 GCTCTTTCGCGGTACCACCTTTTTTCATGAACTCAA 17 201 0 TGTGTGATGCGGCCCGCCCGCTTTATTGACCGCGCA 21 112 0 TAAATAGGCCGACACTCATGCTTTTTCATATAGAAG 28 257 1 GTTGTTTATGTTCTTACATGTTTTTTATCGATACTC 19 194 0 * * ******** MAP Score: 16.4906 Motif 4 CCCTGCGATCAGAAATGAAAGGAGAACGGAAAAA 0 23 1 AATTGTTTCGACACATGATAGGCGTTTGTCACAA 3 231 1 TTTGTGGTATACACATGCAGGGTTTGGTATGATA 4 71 1 AAACGGGAAGGGAAAGAAAAGGAGTGC 12 19 1 GAACGGTCAAGCAAATGAAGGGAGGAAGCGGAA 14 110 1 TGAAAAGCCGGGGCGGTTTCTAGAG 16 1 1 GCCTTGTCTTATAAAAGAGGGGATTATCA 16 40 1 AACGGGAAGAGTACAAAAAAGGCGCATGCAGAGA 17 40 1 AGCCATTTTTAAACATGCTGGAGGGTTATG 17 280 1 CAGGTCATTTGCAAATCCTGCGTGAAGGAGTAGA 21 30 1 ATCAAAGAGCGGACAGGCTGCGCGGTCAATAAAG 21 94 1 GGGCCGCATCACACACGCTGGGAGGAAAAGCAG 21 133 1 TATAATAGAGAAAAATAAGGGGTGACTGAC 22 55 1 CGCATAGGCTAAAAAAGCGGGGCGTGTCCAAGGG 23 42 1 AAGAAAGAACGCAAAAACGGGGTGAACGG 25 47 1 AGCCTGGGATAAACGTGCAGGGTGAAAAAAATCT 26 61 0 * *** ** *** * MAP Score: 13.1546 Motif 5 TGAAAAGCCGGGGCGGTTTCTAGAG 16 1 1 GTAAGAACATAAACAACTGGAGGGATATGAA 19 213 1 CGCATAGGCTAAAAAAGCGGGGCGTGTCCAAGGG 23 42 1 CAGTTTAGGAAAAGAGGTGAAGGGTCTTGGCGGA 28 27 1 TGCGCGGTCAATAAAGCGGGCGGGCCGCATCACA 21 112 1 AAATGGCATTGAAAAGGAGATGTGACAT 2 156 1 ACATGACAGTGAAGAGGAGATGTGATCTTATGCT 18 65 1 GGTGTGAATCAAAGAGCGGACAGGCTGCGCGGTC 21 87 1 TGTGTAGCATGAAAAGCCGACAAGAACGGTCAAG 14 87 1 GAGTTCATGAAAAAAGGTGGTACCGCGAAAGAGC 17 203 1 CTTCTATATGAAAAAGCATGAGTGTCGGCCTATT 28 259 0 AAGGGAAAATGTACAGGAGGAATGATTGGG 1 119 1 ACGGGAAGGGAAAGAAAAGGAGTGC 12 21 1 TAATAGAGAAAAATAAGGGGTGACTGAC 22 57 1 GTAAGCATTAAAATAGCGTGAACGAATGGGAGAT 18 234 1 ATGCTTTTTCATATAGAAGGTAAGGAGAAGACGG 28 274 1 TATGAAGAAAAAAGAAACGGCGACTTCGTTTCTT 22 21 0 CATGCGGAGCGAACAGCTGGAAAATTATACGCAT 28 108 1 GAGTATCGATAAAAAACATGTAAGAACATAAACA 19 194 1 TGACGGTTTTATATAGAGGAGATGAAAGA 27 107 1 *** *** ** * * MAP Score: 11.0739 Motif 6 ACCGATCCCTGCGATCAGAAATGAAAGGAGAACGGAAAAA 0 17 1 AGTAATAAGGGAAAATGTACAGGAGGAATGATTGGG 1 113 1 ATATTAAAATGGCATTGAAAAGGAGATGTGACAT 2 150 1 TGTGATAGAATCAAAGAGAAGAATCTGACAA 8 1 1 TCGGGAGTTCAATAGAAGAGGTGTAACACG 10 3 1 TTCTATAAACGGGAAGGGAAAGAAAAGGAGTGC 12 13 1 ATCCTTTCAGGGTTTGCTTAAGAAAAAAAGATACTCGTTT 13 115 0 ACACACTTTAGCACAGGCAAAGAAAAAAAGAACAAGACTT 14 52 0 CGACAAGAACGGTCAAGCAAATGAAGGGAGGAAGCGGAA 14 104 1 GCTTAGAACGGGAAGAGTACAAAAAAGGCGCATGCAGAGA 17 34 1 TGCATGAACTGATTGAGTTCATGAAAAAAGGTGGTACCGC 17 189 1 GTTTAAAAATGGCTGAGAACGAAAAAAGAGCTCTTCATCC 17 254 0 TAAAGTACATGACAGTGAAGAGGAGATGTGATCTTATGCT 18 59 1 AAACGAGCTTGATAATGCAAATAAAATATGATAATGATAA 19 75 1 CCAAATGGACGAGTATCGATAAAAAACATGTAAGAACATA 19 184 1 TTTTGGACACGCATAGGCTAAAAAAGCGGGGCGTGTCCAA 23 33 1 * * * * **** * * MAP Score: 10.8164 Motif 7 CCGTTCTTGTCGGCTTTTCATGCTACACACTTT 14 83 0 CTGCTTTTCCTCCCAGCGTGTGT 21 143 0 TATAATTTTCCAGCTGTTCGCTCCGCATGGATG 28 104 0 TACCGCGAAAGAGCTTTTCGTCCTTTTACAGGG 17 223 1 TTTCAGCAAACGGCTTCTCTCTCTGCATGCGCC 17 60 0 AACGAAAAAAGAGCTCTTCATCCCTGTAAAAGG 17 244 0 AGTCAGCTGATCTCTCTTGTTCACAG 1 3 1 CGCACATACTCTGCATTTCATTCTAGGTGTTTA 6 45 0 GCACTCCTTTTCTTTCCCTTCCCGTT 12 20 0 TGGACACGCCCCGCTTTTTTAGCCTATGCGTGT 23 39 0 ATACAACGGGCTGATTTTTGTACGAAACGTATT 3 42 0 GACCTGTTTGCAGATTTTCTGACAAC 21 3 0 ACCATATGATGTGCTTTTCACTATATTCTACTC 21 57 0 GTATTATAGTGAGCTTCTTTCTCATTATTTCTT 3 79 0 AAGCAGTCAGATGTTCTAACCCTTTTTGGA 23 7 1 TTAAGTGTGAGGGATGCTCTCACAGTGTTATGA 28 159 1 AAATATAGCACAGGTCTTCATTCACTGTGAACA 1 27 0 AACGGAAAAACCGCTTTTTACAATTGCGATGCT 0 47 1 CAGTGGGTTTGAGATGTTTATTCTCATTCTTGG 6 89 0 GTGCAGTTTATACACATACTTAT 24 0 1 * ******* * * MAP Score: 6.86851 Motif 8 AGTCAGCTGATCTCTCTTGTTC 1 0 1 TTAATCATTTTGTCAGAGTATTATAGTGAGCT 3 97 0 GCATATGCTTTGTCAGATTCTTCTCTTTGATT 8 18 0 GCATATGCTGTGTCAGGTTTTTTTTTGTTTTT 8 42 1 TCACGAGGCTTGTCACAATTTCAGAAAAATAA 13 72 0 ACAAGACTTTTGTCGCCTTGTCCAAAAAACGT 14 29 0 TGACCGTTCTTGTCGGCTTTTCATGCTACACA 14 87 0 GTTGTCAGAAAATCTGCAAACAGG 21 2 1 AAAGAAACGAAGTCGCCGTTTCTTTTTTCTTC 22 20 1 AAGCAGTCAGATGTTCTAACCCTTTT 23 4 1 AATGCTTTTTTGTCAGCTTGTCTTTTCCAGTG 27 32 1 AAAGCATGAGTGTCGGCCTATTTATGAAGTAG 28 249 0 ******* * ** MAP Score: 6.57585 Motif 9 ATTATTTTTGGGCATGCTGATGTTGAATGCATTTG 2 94 1 GATATTCAAGCGGATGCCGATTGTGACAAACGCCT 3 250 0 TTGTGGTATACACATGCAGGGTTTGGTATGATAAT 4 72 1 GCTCATCCGTGATATGCGGCAGCTGACATCCGACT 4 181 0 TTTTTTTTGCAATATGCGGAGTAAACACCTAGAAT 6 24 1 CACCTAGAATGAAATGCAGAGTATGTGCGAGCAGA 6 49 1 TCTGACAAAGCATATGCTGTGTCAGGTTTTTTTTT 8 33 1 ACAAACCCAACGAATGCAAAGGATGATGGCA 8 129 1 TGAAAAGCCGGGGCGGTTTCTAGAGA 16 1 1 ACAAAAAAGGCGCATGCAGAGAGAGAAGCCGTTTG 17 52 1 AATAGAGAAAAATAAGGGGTGACTGAC 22 58 1 GCATAGGCTAAAAAAGCGGGGCGTGTCCAAGGGGG 23 43 1 CCCTATTATGGACAAGGAGAGCCTGGGATAAACGT 26 79 0 CAAAGGGATTGGCAAGCTGAAAATGCTTTTTTGTC 27 11 1 GTACTAGTCAAGCATGAGGAGCCTACTTCATAAAT 28 227 1 ** **** * * ** MAP Score: 1.97865 Motif 10 GATTGGAACAGGCTTCTTTCTCGGTTCCAGCA 0 76 0 ATTCCCTTTTGGCTGGTCTTTTTTTGT 0 149 1 TTCTAACAAAGCCTTCTCTGTTATAATTCATA 6 224 1 ATTGACAAACGCCTTGTATTTTGGTATATTTT 7 15 1 TTTTGTTTTTGCCTGCTTTGTTCTTGACTAAA 8 64 1 GCACTCCTTTTCTTTCCCTTCCCGTT 12 20 0 TTAGTGACAGGCTTTTTTTATTTTGTCATGAA 13 36 1 TTTTTTCTTTGCCTGTGCTAAAGTGTGTAGCA 14 64 1 AAAAGATTCTGCCGTTTTTTTCATGTGTAAAA 15 36 1 TAGAGAAACCGCCTTGTCTTATAAAAGAGGGG 16 30 1 TTCAGCAAACGGCTTCTCTCTCTGCATGCGCC 17 60 0 CATGCCGGCGCTCTTTTTCAGGTTT 18 3 1 ACCATGCCCTGCCGGAGCTGTTTTAAAACCTG 18 28 0 GATGCGGCCCGCCCGCTTTATTGACCGCGCAG 21 111 0 AAACGAAGTCGCCGTTTCTTTTTTCTTCATAT 22 24 1 GTCAGTCACCCCTTATTTTTCTCTATTATAT 22 54 0 TGTGGATAACGCTTGTTTTATTACAGGACATC 24 62 1 TTCCTAAACTGCTGTATCTATTGTACAA 28 6 0 ***** *** ** MAP Score: 1.8061 Motif 11 AGAACGGAAAAACCGCTTTTTACAATTGCGA 0 45 1 TGCTCGTATTTCCGCCTTTTCAAAGCAATCG 4 39 1 TTCAAATGGATGTTCCTTTCTTTTGCATATT 4 117 0 AATGTCCTCCGTTCTAAACCGTTAA 5 18 0 AGAAATATCATGTTCCTTTTTTCTGGCTTTG 6 176 0 ATGTATGTATCTTCCTTTCTTAAAGCAAAA 11 70 0 TCCTTTAGTGACAGGCTTTTTTTATTTTGTC 13 32 1 GTTCGTCATCCTTTCAGGGTTTGCTT 13 136 0 AAAAAAAGATTCTGCCGTTTTTTTCATGTGT 15 33 1 TCTCTCTGCATGCGCCTTTTTTGTACTCTTC 17 45 0 CTTTCGCGGTACCACCTTTTTTCATGAACTC 17 203 0 AAAGAGCTTTTCGTCCTTTTACAGGGATGAA 17 230 1 TTTTTCGTTCTCAGCCATTTTTAAACATGCT 17 268 1 CGGCGACATCCTTTCTATTTGAAAAA 20 5 1 ACAGTCTAAGACTTGCTTTTTTCTTTTGAAA 20 45 0 TCAGATGTTCTAACCCTTTTTGGACACGCAT 23 16 1 CTTGGACACGCCCCGCTTTTTTAGCCTATGC 23 43 0 TTTACGCGTGTAATCCTTTTGAAAGTATAAA 24 95 0 GGCAAGCTGAAAATGCTTTTTTGTCAGCTTG 27 21 1 AGCATGAGTGTCGGCCTATTTATGAAGTAGG 28 248 0 AGGCCGACACTCATGCTTTTTCATATAGAAG 28 262 1 ** ******** MAP Score: 0.598198 Motif 12 AGCCCGTTGTATGAAAAAGAAATAATGAGAAA 3 63 1 TTATTGTTCCCGAAAAAAGCAATTGTTTCGAC 3 211 1 AATATGCAAAAGAAAGGAACATCCATTTGAAC 4 117 1 ATCCATTTGAACGAACAAGAAACGATTCAGGA 4 137 1 AGACCCCGCCAAGAATGAGAATAAACATCTCA 6 81 1 CAAAGCCAGAAAAAAGGAACATGATATTTCTG 6 176 1 ATACAGACTCCTAAATAAGAAATTAAATGATT 6 266 1 CAAAGCAGGCAAAAACAAAAAAAAACCTGACA 8 52 0 ATTTGGTAGGATAAACGAGTATCTTTTTTTCT 13 103 1 CAAAGAAAAAAAGAACAAGACTTTTGTCGCCT 14 43 0 TTGTGTTTTAAAAAAAGAGCATATCCCATTCA 18 155 1 TCAACCATATAAAAATGAGTAAACCGGCTGTG 18 184 1 CTTATATGCAACGAATGAATATGTAAGATTGG 19 123 0 TATGATCCAAATGGACGAGTATCGATAAAAAA 19 178 1 GTGTTTCAAAAGAAAAAAGCAAGTCTTAGACT 20 42 1 TTATATATGAAGAAAAAAGAAACGGCGACTTC 22 28 0 TTCTTCATATATAATAGAGAAAAATAAGGGGT 22 46 1 AGACAAGCTGACAAAAAAGCATTTTCAGCTTG 27 23 0 ATGATATCGTAGAAATGAAAAAACCGCATCCA 28 78 1 TACCTTCTATATGAAAAAGCATGAGTGTCGGC 28 264 0 * *** ****** MAP Score: 0.327831 Motif 13 AGCGGTTTTTCCGTTCTCCTTTCATTTCTGAT 0 30 0 CAATCATTCCTCCTGTACATTTTCCCTTATTA 1 115 0 CAATAAGGAATCCTGCGCTTTCCCGAGAAATA 3 185 0 TCATACCAAACCCTGCATGTGTATACCACAAA 4 71 0 TTCTAACAAAGCCTTCTCTGTTATAATTCATA 6 224 1 TTTTGTTTTTGCCTGCTTTGTTCTTGACTAAA 8 64 1 CCTTTTCTTTCCCTTCCCGTTTATAGAACCG 12 9 0 GAGATAGTGCCCTGAGCCTTCGTCCTTTAGT 13 9 1 TCCGCTTCCTCCCTTCATTTGCTTGACCGTTC 14 110 0 TTCTCTCTCTGCATGCGCCTTTTTTGTACTCT 17 47 0 CATAACCCTCCAGCATGTTTAAAAATGGCT 17 280 0 ATTTGAAAAATCCTTCGTGTTTCAAAAGAAAA 20 26 1 TGCTTTTCCTCCCAGCGTGTGTGATGCGGCCC 21 133 0 CTTGGACACGCCCCGCTTTTTTAGCCTATGCG 23 42 0 ATTTTTTTCACCCTGCACGTTTATCCCAGGCT 26 63 1 CCGTTCCTCTCCGTGCTTTGTTTCTAGCCCTA 26 109 0 ****** * *** MAP Score: 0.138856