AlignACE 3.0 10/20/99 AlignACE2 -i BS/BS_sum_all073_300.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944258876 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 ydhC 248 similar to transcriptional regulator (GntR family) #1 ydhD 126 similar to hypothetical proteins from B. subtilis #2 ydhE 145 similar to macrolide glycosyltransferase #3 yjiB 300 similar to monooxygenase #4 yjiC 22 similar to macrolide glycosyltransferase #5 pksS 300 hydroxylase of the polyketide produced by the pks cluster #6 bioI 68 cytochrome P450-like enzyme #7 bioW 251 6-carboxyhexanoate-CoA ligase #8 ytaP 217 ytaP #9 yvmC 300 similar to hypothetical proteins #10 vpr 300 extracellular serine protease Motif 1 TCCTCCATTGAAAAGATGTAAAAATGTAATCGTG 0 16 1 ACAGATGGTAATGGGAAGCAACAAACTGCCTTGT 0 170 0 CCCATGCAAGGTACAAATGAATGAA 2 1 0 GCAGAATAGAAAAAAATTGAAAGATTATGGTAAG 3 113 1 TCCCGCTTTCGAAAAAGAGAGGGACTACCACAAA 3 226 0 ACTCCCCTTGAAAGAATTCAGCAATTAATGTTCC 3 268 0 ATATTCACCAAGAAAACGAAGGATTGAAGGTCG 5 9 1 GAGAAGAACGAAAAAAGTGAAAAAACGGCTCGAT 5 152 0 ATTAGTTTACAAAAAACAGAATGATTTGAAATGT 5 234 0 TTATTTTTGAACAGAAAGGAGAAAATCAC 6 49 1 CTGTAAAAAGAAATCGAAAAAGACCGTTTTG 7 7 1 CAGTTGGTTAAAAGGAAACAAAAAGACCGTTTTC 7 44 0 ATTGACAGAAACAGGAGAGAATAATATATTCTAA 7 100 1 AAAGGGCGAGAAATGATGCAAGAAGAAACTTTTT 7 204 1 CGTAAATGTGAAGTAAGCGAATAAGGAAGGGTGA 8 189 1 GGAATAGCTAGAACAACTGAACAAGACGAATGGC 9 221 0 AAGTTATCCCAAAGATAAGAACAACTTAATCACA 10 43 1 AGAACCCTGTGTATAAGTGAATAAACCTGTGTAT 10 145 0 TTATACACAAACAAAATCCAATAAATGGTCCAAA 10 195 1 TAAATGGTCCAAATGACACAAGGATTTTTTTGAA 10 216 1 TGTATTTAGAAAAAATGTGAAAGATCTAGTATAT 10 262 0 *** ** *** ** MAP Score: 14.7353 Motif 2 GTAAAAATGTAATCGTGCGCTATTCTGGCGGAGGTAT 0 33 1 GCAACTGAAAAAACGGCGTGTTTTTCTTCGTCAATAG 0 76 0 TTTTGAATATATTCAAGGGCTTTTCTTCATCAAAATC 0 209 0 GGAGAGCAGAACCCTTGGTATTTTTTTATGTATTCAC 1 31 1 CTCAAATCGTATTCTGACTCTTTGTTTGATCAGACTA 2 61 0 TTGGTTGAAAACAGAGACGTTTTTTGAGCGGAGCG 3 8 1 ATCTTACCATAATCTTTCAATTTTTTTCTATTCTGCA 3 112 0 TATTTGTGGTAGTCCCTCTCTTTTTCGAAAGCGGGAG 3 224 1 TACGACCTTCAATCCTTCGTTTTCTTGGTGAATAT 5 8 0 TTACATTTCAAATCATTCTGTTTTTTGTAAACTAATT 5 232 1 TTTTGTGTGAAAACGGTCTTTTTGTTTCCTTTTAACC 7 36 1 AACTGCCATAAATCGATCCTTTCTTCTATTGACAGAA 7 73 1 AGAATATATTATTCTCTCCTGTTTCTGTCAATAGAAG 7 95 0 ACTTTAAGTGATGCCTGCCATTCGTCTTGTTCAGTTG 9 205 1 ATGTCCACAAACTCTATCTATATTTTGTATACGAACG 10 89 1 GGTCCAAATGACACAAGGATTTTTTTGAATTTTCAAG 10 221 1 * * * ******* MAP Score: 12.4597 Motif 3 TGTCCTATTGACGAAGAAAAACACGCCGTTTTTT 0 72 1 GGTAATGGGAAGCAACAAACTGCCTTGTCAGATC 0 164 0 TATGATTTTGATGAAGAAAAGCCCTTGAATATAT 0 206 1 TGGTGAATACATAAAAAAATACCAAGGGTTCTGC 1 36 0 AGTGCAGAATAGAAAAAAATTGAAAGATTATGGT 3 110 1 CCCGCTTTCGAAAAAGAGAGGGACTACCACAAAT 3 225 0 ATATTCACCAAGAAAACGAAGGATTGAAGG 5 6 1 AGGGAGAAGAACGAAAAAAGTGAAAAAACGGCTC 5 155 0 AAGAATCAATAAAAGCAATCGGTATGAT 6 4 1 CTTTCTGTTCAAAAATAAAAACAATCGACATCAT 6 33 0 TTTGAACAGAAAGGAGAAAATCAC 6 54 1 CTGTAAAAAGAAATCGAAAAAGACCGTT 7 4 1 TTGGTTAAAAGGAAACAAAAAGACCGTTTTCACA 7 41 0 TTTATGTTGGAAAAATAAAGGGGAACCCAGATCT 8 151 1 TGGAAGGAAAAGGGATAAAATGACTAATGTTTAC 9 106 1 TTCGTTATACACAAACAAAATCCAATAAATGGTC 10 191 1 CTTTGTATTTAGAAAAAATGTGAAAGATCTAGTA 10 265 0 * *** *** *** MAP Score: 11.272 Motif 4 TTCCTCCATTGAAAAGATGTAAAAATGTAATCGTG 0 15 1 TATAACAGATGGTAATGGGAAGCAACAAACTGCCT 0 173 0 GATATGTGGTGAATACATAAAAAAATACCAAGGGT 1 41 0 CCCATGCAAGGTACAAATGAATGAA 2 0 0 GAAAGATTATGGTAAGATGAACGAAATTCGAGGGG 3 131 1 GAGAAGAACGAAAAAAGTGAAAAAACGGCTCGATA 5 151 0 ATATAGTTTTAGAGACAGGATTACATTTCAAATCA 5 212 1 CTAATAGGGTAAATAGATGAATCAAATTGCTGAAT 5 266 0 TTATTTTTGAACAGAAAGGAGAAAATCAC 6 49 1 ATGGCAGTTGGTTAAAAGGAAACAAAAAGACCGTT 7 47 0 TCTGTCAATAGAAGAAAGGATCGATTTATGGCAGT 7 74 0 TTCTATTGACAGAAACAGGAGAGAATAATATATTC 7 96 1 AATTTATCAAAAACAGATGAGTTAATATTTTACTA 8 30 0 TGTTGGAAAAATAAAGGGGAACCCAGATCTGTCTC 8 155 1 GATCTGTCTCGTAAATGTGAAGTAAGCGAATAAGG 8 180 1 ACGTTTGGAAGGAAAAGGGATAAAATGACTAATGT 9 101 1 AGAACCCTGTGTATAAGTGAATAAACCTGTGTATA 10 144 0 TGTATTTAGAAAAAATGTGAAAGATCTAGTATATA 10 261 0 * * * ***** ** MAP Score: 10.7834 Motif 5 CTTCCCATTACCATCTGTTATATGATTTTGA 0 186 1 TGAAGAAAAGCCCTTGAATATATTCAAAAGA 0 217 1 GAGAGCAGAACCCTTGGTATTTTTTTATGTA 1 32 1 GTAGACAACTCCCTCTCAAATCGTATTCTGA 2 81 0 CATATATTCCCCCTCGAATTTCGTTCATCTT 3 144 0 TTGTGGTAGTCCCTCTCTTTTTCGAAAGCGG 3 227 1 CGACCTTCAATCCTTCGTTTTCTTGGTGAAT 5 12 0 TACAGCGTAGCCCTTTGAGCTTTCGTTCAAA 5 108 1 GTGATTTTCTCCTTTCTGTTCAAAAATAAA 6 48 0 CATAAATCGATCCTTTCTTCTATTGACAGAA 7 79 1 GGGTATCCCTCTCATCTATTTAGTAAA 8 6 1 AAATATTAACTCATCTGTTTTTGATAAATTG 8 35 1 ATCTGGGTTCCCCTTTATTTTTCCAACATAA 8 152 0 CCCATCACCCTTCCTTATTCGCTTACTT 8 199 0 TGTGTATAACTCCTTCGTTATACACAAACAA 10 178 1 TGTGTTTCCCCCTTTGTATTTAGAAAAAAT 10 280 0 ********* * MAP Score: 10.6896 Motif 6 CAACTGAAAAAACGGCGTGTTTTTCTTCGTCAAT 0 78 0 TCCGCTCAAAAAACGTCTCTGTTTTCAACCAA 3 8 0 TTACGACCTTCAATCCTTCGTTTTCTTGGTGAAT 5 12 0 AAAAGTGAAAAAACGGCTCGATATAAAGCAGCGC 5 140 0 ATTACATTTCAAATCATTCTGTTTTTTGTAAACT 5 231 1 AGAATCAATAAAAGCAATCGGTATGATGTCGATT 6 11 1 TTCAAAAATAAAAACAATCGACATCATACCGATT 6 26 0 GTTTTCACACAAAACGGTCTTTTTCGATTTCTTT 7 16 0 GTTTTGTGTGAAAACGGTCTTTTTGTTTCCTTTT 7 35 1 GTCAATAGAAGAAAGGATCGATTTATGGCAGTTG 7 72 0 TGACACTATAAAAAGTTTCTTCTTGCATCATTTC 7 213 0 CATGTCCACAAACTCTATCTATATTTTGTATACG 10 88 1 ATAAGTGAATAAACCTGTGTATATATATAGTTAG 10 133 0 TTCTGTGTATAACTCCTTCGTTATACACAAACAA 10 175 1 *** * *** *** MAP Score: 10.6211 Motif 7 GAATAGCGCACGATTACATTTTTACATCTTTTCAAT 0 22 0 GCATGGGTTGTGTTCCCATTTTACGATTAGTAGTAG 2 28 1 ATCTTTCAATTTTTTTCTATTCTGCACTGCTGTTTT 3 102 0 GCCTGCCTGCTGTTATCAATTTAATTATTTGTGGTA 3 199 1 CAGTCGTGCTGGATATCAATTGTATATACTGCACGA 5 50 0 TCGAGCCGTTTTTTCACTTTTTTCGTTCTTCTCCCT 5 153 1 TTTAGAGACAGGATTACATTTCAAATCATTCTGTTT 5 219 1 GACATCATACCGATTGCTTTTATTGATTCTT 6 5 0 GCAATCGGTATGATGTCGATTGTTTTTATTTTTGAA 6 24 1 GTGATTTTCTCCTTTCTGTTCAAAAATAAA 6 48 0 ACGGTCTTTTTGTTTCCTTTTAACCAACTGCCATAA 7 48 1 ATATTCTAATTGTTAACCTTTGAATATAATTGGTTA 7 125 1 GAATATAATTGGTTAACAATTTAGGTGAGAAGCGCT 7 146 1 GACAGATCTGGGTTCCCCTTTATTTTTCCAACATAA 8 152 0 GAAAATGTGATGTTTACATTTATTTTCAAATATTTG 9 49 1 ACATTAGTCATTTTATCCCTTTTCCTTCCAAACGTC 9 100 0 CCCCTAAAACTTATCCCGCTTTAAGTCATCACCCTC 9 266 0 GTGGACATGTGGATATCTCTTGTGATTAAGTTGTTC 10 61 0 TATACTAGATCTTTCACATTTTTTCTAAATACAAAG 10 263 1 **** * *** * * MAP Score: 9.85736 Motif 8 TAAGATGAACGAAATTCGAGGGGGAATATATGATGC 3 143 1 TGAAGTAAGCGAATAAGGAAGGGTGATGGG 8 197 1 ATTTATGTTGGAAAAATAAAGGGGAACCCAGATCTG 8 150 1 TTGACGTTTGGAAGGAAAAGGGATAAAATGACTAAT 9 98 1 CATTTTTTCTAAATACAAAGGGGGAAACACA 10 279 1 TTTGACTAACGAATAATGGGGGTTAAAT 1 108 1 CCCGCTTTCGAAAAAGAGAGGGACTACCACAAATAA 3 223 0 CCTTTGAACGAAAGCTCAAAGGGCTACGCTGTATTA 5 105 0 TTTTATTTTTGAACAGAAAGGAGAAAATCAC 6 47 1 TCTCTTTTTCGAAAGCGGGAGGTGAAGTGGAACATT 3 240 1 TCTATTGACAGAAACAGGAGAGAATAATATATTCTA 7 97 1 TATTCACCAAGAAAACGAAGGATTGAAGGTCGTAAC 5 11 1 ATAGGGAGAAGAACGAAAAAAGTGAAAAAACGGCTC 5 155 0 CAGAATAGAAAAAAATTGAAAGATTATGGTAAGATG 3 114 1 TATTTAGAAAAAATGTGAAAGATCTAGTATATATTT 10 258 0 GTTATCAGTGAAAGGGCGAGAAATGATGCAAGAAGA 7 194 1 *** ****** * MAP Score: 9.61998 Motif 9 GAATTTGAGGTACGATATGTTTGCTGAACGACGGTCGA 0 123 0 TTACCATCTGTTATATGATTTTGATGAAGAAAAGCCCT 0 193 1 TAACGGGGCCTCTTAGATATGTGGTGAATACATAAAAA 1 53 0 AAGGGCTACGCTGTATTATTTTGATGAAAGTGGCTGTC 5 85 0 CATTTCAAATCATTCTGTTTTTTGTAAACTAATTCAGC 5 235 1 GGGTATCCCTCTCATCTATTTAGTAAAATATTAACTC 8 9 1 AAATATTAACTCATCTGTTTTTGATAAATTGATATTAT 8 35 1 TAAGCGGTTACAATAATTGTTTTCGAAATATTCCATAA 8 83 1 TCACATCATTTACTAAATATTTAGTAAATATTATGGAA 8 113 0 TAGTAAATGATGTGATTTATGTTGGAAAAATAAAGGGG 8 136 1 TGAATATGCGTGTAAAAAGTGTGTGGAAAATGTGATGT 9 24 1 GATATGGGTATTGAAAATGATTATTAAAATCTTAAAAA 9 157 1 CACTTAAAGTTTCCAAATGTTTTTTAAGATTTTAATAA 9 177 0 GTCCAAATGACACAAGGATTTTTTTGAATTTTCAAGAA 10 222 1 GTGAAAGATCTAGTATATATTTCTTGAAAATTCAAAAA 10 242 0 ATACTAGATCTTTCACATTTTTTCTAAATACAAAGGGG 10 264 1 * * * *** **** MAP Score: 7.57405 Motif 10 ACGATTACATTTTTACATCTTTTCAATGGAGGAA 0 15 0 ATAATACCTCTTTTGAATATATTCAAGGGCTTTT 0 222 0 CCCTTGGTATTTTTTTATGTATTCACCACATATC 1 42 1 CTTACCATAATCTTTCAATTTTTTTCTATTCTGC 3 113 0 ATCGAGCCGTTTTTTCACTTTTTTCGTTCTTCTC 5 152 1 AAAACGGTCTTTTTCGATTTCTTTTTACAG 7 6 0 AAAAGTTTCTTCTTGCATCATTTCTCGCCCTTTC 7 203 0 ACAATAATTGTTTTCGAAATATTCCATAATATTT 8 92 1 AAAATGTGATGTTTACATTTATTTTCAAATATTT 9 50 1 ATCACTTAAAGTTTCCAAATGTTTTTTAAGATTT 9 183 0 GCCATTCGTCTTGTTCAGTTGTTCTAGCTATTCC 9 221 1 ATATACTAGATCTTTCACATTTTTTCTAAATACA 10 262 1 **** ** * *** MAP Score: 7.06323 Motif 11 AATCATTCTGTTTTTTGTAAACTAATTCAGCA 5 242 1 TATTATGGAATATTTCGAAAACAATTATTGTA 8 91 0 ATTTACTAAATATTTAGTAAATATTATGGAAT 8 112 0 AACCCAGATCTGTCTCGTAAATGTGAAGTAAG 8 174 1 CTAGTATATATTTCTTGAAAATTCAAAAAAAT 10 239 0 CCCTCTCATCTATTTAGTAAAATATTAACTCA 8 16 1 TCCCCCTTTGTATTTAGAAAAAATGTGAAAGA 10 272 0 AGTCCCTCTCTTTTTCGAAAGCGGGAGGTGAA 3 234 1 ACTCTATCTATATTTTGTATACGAACGTATAT 10 99 1 GTGTAAAAAGTGTGTGGAAAATGTGATGTTTA 9 33 1 TGACTAATGTTTACTAGTAAACATTTATCATG 9 126 1 ATATAATACCTCTTTTGAATATATTCAAGGGC 0 226 0 AACTCATCTGTTTTTGATAAATTGATATTATC 8 42 1 AATGTAATCCTGTCTCTAAAACTATATATCTA 5 207 0 * *** ****** MAP Score: 5.72568 Motif 12 TAAGATGAACGAAATTCGAGGGGGAATATATGATGCCT 3 143 1 ATAGGGAGAAGAACGAAAAAAGTGAAAAAACGGCTCGA 5 153 0 AAGAATCAATAAAAGCAATCGGTATGATGTCGATTGT 6 9 1 TTTTTATTTTTGAACAGAAAGGAGAAAATCAC 6 46 1 CTGTAAAAAGAAATCGAAAAAGACCGTTTTG 7 3 1 TTTCTTCTATTGACAGAAACAGGAGAGAATAATATATT 7 92 1 TGTTAACCTTTGAATATAATTGGTTAACAATTTAGGTG 7 135 1 TATTATCATATAAAAGTAAGCGGTTACAATAATTGTTT 8 67 1 ATTTATGTTGGAAAAATAAAGGGGAACCCAGATCTGTC 8 150 1 TATGTCATGCTGAATATGCGTGTAAAAAGTGTGTGGAA 9 14 1 CCCAAATATTTGAAAATAAATGTAAACATCACATTTTC 9 49 0 ATTGACGTTTGGAAGGAAAAGGGATAAAATGACTAATG 9 97 1 TTGAGGGTGATGACTTAAAGCGGGATAAGTTTTAGGGG 9 264 1 TGTGTATAAGTGAATAAACCTGTGTATATATATAGTTA 10 134 0 ACATTTTTTCTAAATACAAAGGGGGAAACACA 10 278 1 **** ** ** * * MAP Score: 3.73008 Motif 13 ATTACATTTTTACATCTTTTCAATGGAGGAAAAAAT 0 4 0 AAACATATCGTACCTCAAATTCAGGGATCTGACAAGGCAGTT 0 139 1 GCTTCCCATTACCATCTGTTATATGATTTTGATGAAGAAAAG 0 185 1 TTTGTGGTAGTCCCTCTCTTTTTCGAAAGCGGGAGGTGAAGT 3 226 1 AGCAATTTGATTCATCTATTTACCCTATTAGGCGAGGAGA 5 270 1 AATCGATCCTTTCTTCTATTGACAGAAACAGGAGAGAATAAT 7 83 1 GCGCTACACGTTCTTCAGTTATCAGTGAAAGGGCGAGAAATG 7 177 1 CTTATTCGCTTACTTCACATTTACGAGACAGATCTGGGTTCC 8 172 0 TTCTAGCTATTCCATCTTGTATTTGAGGGTGATGACTTAAAG 9 242 1 * * *** ** * ** MAP Score: 3.21423 Motif 14 TACTACTAATCGTAAAATGGGAACACAACCCA 2 31 0 TTGGTTGAAAACAGAGACGTTTTTTGA 3 5 1 CCTCCCGCTTTCGAAAAAGAGAGGGACTACCA 3 230 0 GGGAGAAGAACGAAAAAAGTGAAAAAACGGCT 5 156 0 CTGTAAAAAGAAATCGAAAAAGA 7 1 1 CGAGAAATGATGCAAGAAGAAACTTTTTATAG 7 210 1 TGATTTATGTTGGAAAAATAAAGGGGAACCCA 8 148 1 TGAATATGCGTGTAAAAAGTGTGTGGAAAATG 9 24 1 AAAAAGTGTGTGGAAAATGTGATGTTTACATT 9 37 1 ** ****** ** MAP Score: 2.65577 Motif 15 CAAGGGAGAGCAGAACCCTTGGTATTTTTT 1 27 1 GAGTTATACACAGAACCCTGTGTATAAGTG 10 160 0 AAAATGGGAACACAACCCATGCAAGGTACA 2 20 0 ACTGCCTTGTCAGATCCCTGAATTTGAGGT 0 150 0 GTACGGTCACTCCCCTTGAAAGAATTC 3 283 0 TAATCATTTTCAATACCCATATCATGATAA 9 150 0 GAATCTCCAGTCTCCTTATCTA 4 5 0 ********** MAP Score: 0.817492 Motif 16 ATTTTTTCCTCCATTGAAAAGATGT 0 4 1 AAACACGCCGTTTTTTCAGTTGCCAGTAGTC 0 90 1 TTCATTCATTTGTACCTTGCA 2 0 1 ATCTTTCAATTTTTTTCTATTCTGCACTGCT 3 107 0 TATCGAGCCGTTTTTTCACTTTTTTCGTTCT 5 151 1 TTTTTCGTTCTTCTCCCTATTGAATGACGCC 5 171 1 GATTCATCTATTTACCCTATTAGGCGAGGAG 5 278 1 GTGATTTTCTCCTTTCTGTTCAAAA 6 53 0 CAAAACGGTCTTTTTCGATTTCTTTTTACAG 7 10 0 AACGGTCTTTTTGTTTCCTTTTAACCAACTG 7 47 1 AATATATTATTCTCTCCTGTTTCTGTCAATA 7 99 0 AGCGCTACACGTTCTTCAGTTATCAGTGAAA 7 176 1 TTTCAAAGCGGTTCTCCAATTT 10 1 0 TATACACAGGTTTATTCACTTATACACAGGG 10 144 1 ACACAAGGATTTTTTTGAATTTTCAAGAAAT 10 231 1 TGTGTTTCCCCCTTTGTATTTAGAA 10 285 0 ******** ** MAP Score: 0.451351 Motif 17 TGACGAAGAAAAACACGCCGTTTTTTCAGTTGCC 0 80 1 TTGGTTGAAAACAGAGACGTTTTTTGAGCGGAG 3 9 1 GCTTTCGTTCAAAGGCGCTGCTTTATATCGAGCC 5 126 1 CGCTGCTTTATATCGAGCCGTTTTTTCACTTTTT 5 141 1 TTACATTTCAAATCATTCTGTTTTTTGTAAACTA 5 232 1 AATCGGTATGATGTCGATTGTTTTTATTTTTGAA 6 26 1 AAAGAAATCGAAAAAGACCGTTTTGTGTGAAAAC 7 16 1 AAAAGGAAACAAAAAGACCGTTTTCACACAAAAC 7 35 0 GTAAAATATTAACTCATCTGTTTTTGATAAATTG 8 32 1 ** * ******* MAP Score: 0.342428