AlignACE 3.0 10/20/99 AlignACE2 -i BS/BS_sum_all077_300.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944234204 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 yetO 149 alternate gene name: yfnJ; similar to cytochrome P450 / NADPH-cytochrome P450 reductase #1 yfmA 40 yfmA #2 yflT 35 yflT #3 pel 190 pectate lyase #4 yflS 126 similar to 2-oxoglutarate/malate translocator #5 citS 126 two-component sensor histidine kinase #6 yflP 182 yflP #7 citM 195 secondary transporter of the Mg2+/citrate complex #8 yflN 55 yflN #9 yflM 199 similar to nitric-oxide synthase #10 cypA 300 cytochrome P450-like enzyme #11 yrhI 222 similar to transcriptional regulator (TetR/AcrR family) #12 yrhH 300 similar to methyltransferase #13 yvgQ 25 similar to sulfite reductase #14 yvgR 170 similar to sulfite reductase #15 yvgS 197 yvgS #16 yvgT 186 similar to hypothetical proteins #17 yvgV 119 similar to hypothetical proteins #18 yvgW 159 similar to heavy metal-transporting ATPase #19 yvgX 80 similar to heavy metal-transporting ATPase #20 yvgY 73 similar to mercuric transport protein #21 yvgZ 127 similar to hypothetical proteins Motif 1 TTAAAACCGTTTTGTTCTTTTTGATCAATTTT 7 42 0 ATTTTCTTAATTTTTTATTTTTTGCATATACT 11 60 1 GGTGCTAACCTTTGTGTTTTTTAATTAATTAA 4 29 1 AACATTATGTTTTCTGCTTTTTTTTCGGAAAA 12 135 1 GCGGGTGTTTTTTATTGTTTTCCAGGAAGTTG 9 22 1 CGGTCTGCCTTTTTTTATTTTCACTCCTTCGT 5 27 1 TATATGCCGGTTTTTGTTTTTCATTGACACTT 18 19 1 GTTAGCACCCTTTGTGTTTTTCACTTTC 4 6 0 AATTTGGTTTTTTTGTATTTTTAATTTTTTAA 7 70 0 ATGTCGGCCTTTTGGTTTTTTTGCGGTCTTTG 3 34 1 ACTAAACTTTTTCATTTTTTTCCGAAAAAAAA 12 152 0 TCCCTCTAAATTTATCTTTTTTTCTCATGAAA 16 82 1 CACAGGGAATTTTCTCATTTTTCAAAATCCAT 5 65 0 GACATTGGCCTTTTGGTTTTTTCCTTGCT 3 7 0 GATCCGCTTCTTTTTTAATTTTAAAACGATGA 17 88 1 TTCACATCACTTCATGCTTTTCATTGTATCGT 9 84 0 TGCCGGGCGCTTTTTTAATTTCGCAAACTCAT 16 29 1 ATTCCTCCTGTTTATTCTTTCTATTTTCATCC 20 47 0 ATATCACCTCTTTGTTCTTTCTTCTGTTATAA 11 123 0 GGCGCGATATTTCTTTCATTTTTATATACCCC 19 34 1 GAAGATGATGTTTATTTTTTTAAGATAATAAA 12 246 1 AATTCATTTTTTCGGGGTTTTCTTATCAGCGC 17 22 1 ATATTCCTCCTTCATGTTTTCTATATTTCTT 2 9 0 TTCCAGAGTATTTCTTTTTCTTCCAACAAACT 9 122 0 ATTGACCCACTTCTTTATTTTAACAAGACAAG 17 53 0 *** ** ***** MAP Score: 31.1821 Motif 2 CAGCTTCTCAAGTATAGAAAAAACAGCGATC 0 39 1 AAGAAATATAGAAAACATGAAGGAG 2 4 1 AGCAAGGAAAAAACCAAAAGGC 3 1 1 AAAATCTCACAAAATAGAAAATGGGGGTACA 3 163 1 ACATTTTAATTAATTAAAAAACACAAAGGTT 4 35 0 GTTAAGGAGTAGAATGGAAAAGGGGATCGGA 4 77 1 CGAAGGAGTGAAAATAAAAAAAGGCAGACCG 5 27 0 AAGAAAATGGATTTTGAAAAATGAGAAAATT 5 59 1 ATATGAAAAAATCTATAATCC 6 0 1 TCAATTTTCGGCATGAAAAAAATCCCGGGAT 7 19 0 GAACAAAACGGTTTTAAAAAATTAAAAATAC 7 57 1 TAAAAAATTAAAAATACAAAAAAACCAAATT 7 71 1 TTTTGCCATCGTATGGGAAAACCAACCGCAA 7 108 0 TTCCTGGAAAACAATAAAAAACACCCGCGTG 9 19 0 TAAAAACGATACAATGAAAAGCATGAAGTGA 9 79 1 AGAGTTTGTTGGAAGAAAAAGAAATACTCTG 9 120 1 GTATATGCAAAAAATAAAAAATTAAGAAAAT 11 60 0 CATATACTTTATATTAAAAAAAGTTTTTTTC 11 84 1 TTATAAGTTTATATGAAAAAAACTTTTTTTA 11 98 0 AACTTATAACAGAAGAAAGAACAAAGAGGTG 11 120 1 CTTATCATTGGCATTAGAAAGAGGGCAGAAA 12 105 1 TTTTCGGAAAAAAATGAAAAAGTTTAGTTCT 12 156 1 AGACGGCAATGTATTGAAAAATGTTTCAATA 12 186 0 GCTTCATGTAAATAGAAAAAAGAGAAGGACT 14 19 0 TGAGTTTGCGAAATTAAAAAAGCGCCCGGCA 16 29 0 TTGTCTTGTTAAAATAAAGAAGTGGGTCAAT 17 54 1 CATCGTTTTAAAATTAAAAAAGAAGCGGATC 17 88 0 GTAGGGTATTACAATAAAAAACGCT 20 4 0 TGGTAGGATGAAAATAGAAAGAATAAACAGG 20 42 1 * ********* MAP Score: 23.6714 Motif 3 AGAAATATAGAAAACATGAAGGAGGAATATCGAC 2 11 1 AGCAAGGAAAAAACCAAAAGGCCAATGTCGG 3 6 1 CAAAGACCGCAAAAAAACCAAAAGGCCGACATTGG 3 31 0 AAAATCTCACAAAATAGAAAATGGGGGTACATAGT 3 163 1 GAAAGTGAAAAACACAAAGGGTGCTAACCTT 4 6 1 TAGTTAAGGAGTAGAATGGAAAAGGGGATCGGAAA 4 75 1 AAAGATCAATAGAATATTCAATAGGATTATAGATT 6 19 0 AAATTGATCAAAAAGAACAAAACGGTTTTAAAAAA 7 43 1 TGGCAAAAAGGCAAGACAAAAAGGGGAGTAAGGGA 7 131 1 GTAAGGGAGAAAAAAATGTAAGCGGATTCATTTAA 7 158 1 TATAACAGAAGAAAGAACAAAGAGGTGATATCAGA 11 124 1 TTTTTTTCGGAAAAAAATGAAAAAGTTTAGTTCTA 12 153 1 ATAAACATAGGAAACCAAAAGCAGGTGTTTAAA 12 277 1 TCATGTAAATAGAAAAAAGAGAAGGACTCCCTTCT 14 12 0 ATGAAATACTGTAAAATATAATTGGATACATATAT 15 137 0 GAGAAAAAAAGATAAATTTAGAGGGAATACGGCTA 16 73 0 AGAAAATTTAACAAACATAAAAGGGAGTCATCAGA 16 161 1 TTGTCTTGTTAAAATAAAGAAGTGGGTCAATTGCG 17 54 1 AGTGTCAATGAAAAACAAAAACCGGCATATAGCCG 18 15 0 TTCTTGGAAAACAACATATAATAGGTGTAACTTAT 18 50 1 CTTTGAAGAGGGAACCCTAAATCGGAAGGTAAG 18 136 1 GTTTTTTATTGTAATACCCTACGGGGGTATGGTAG 20 13 1 GATGAAAATAGAAAGAATAAACAGGAGGAATTGAT 20 48 1 **** ** ** ** MAP Score: 20.51 Motif 4 CGCTGGAGCGATTATAAAATCTAGAGGTCGTCAGAAA 16 129 1 CTTCATGTAAATAGAAAAAAGAGAAGGACTCCCTTCT 14 12 0 GAAAGTGAAAAACACAAAGGGTGCTAACCT 4 3 1 AGCAAGGAAAAAACCAAAAGGCCAATGTCGG 3 4 1 ATTTTAATTAATTAAAAAACACAAAGGTTAGCACCCT 4 27 0 GCTATCAGGAATTGGGAAAGGAGGAGGAA 9 180 1 CATGAGAAAAAAAGATAAATTTAGAGGGAATACGGCT 16 74 0 ATCGTTTTAAAATTAAAAAAGAAGCGGATCGCAATTG 17 81 0 CATCATCTTCATTTCTAAAAGTGAAGGAAGGTACCAA 12 219 0 TTGAAGAGGGAACCCTAAATCGGAAGGTAAG 18 138 1 ATAATCTTTAAATATAAAATCAGGACGATTTGTAAAA 10 243 0 CGCAAAGACCGCAAAAAAACCAAAAGGCCGACATTGG 3 31 0 AAAGAAAAAGGCAGACGCGGTCTGCCT 5 0 1 AAGAAATATAGAAAACATGAAGGAGGAATATCG 2 6 1 CTTATAACAGAAGAAAGAACAAAGAGGTGATATCAGA 11 122 1 CGATGGCAAAAAGGCAAGACAAAAAGGGGAGTAAGGG 7 128 1 CGAAGGAGTGAAAATAAAAAAAGGCAGACCGCGTCTG 5 21 0 GGGGTATGGTAGGATGAAAATAGAAAGAATAAACAGG 20 36 1 CTTTTTTTTCGGAAAAAAATGAAAAAGTTTAGTTCTA 12 151 1 AGCGCTTGTCTTGTTAAAATAAAGAAGTGGGTCAATT 17 49 1 CACCTGGGGGGTATATAAAAATGAAAGAAATATCGCG 19 36 0 * **** ***** MAP Score: 15.4658 Motif 5 AAAGGCAGACCGCGTCTGCCTTTTTCTTT 5 8 0 AGCACCAGCCGTCCTTTCTAC 5 115 0 GCGCGGCGCAGCCGCCTGCCTGATATCACCC 6 59 0 GCGGCTGCGCCGCGCCTGCCGGACGGGCCGA 6 75 1 TAGAAATTGTCGTCCCTGCCGAACCTTCTGG 6 106 1 TCCCTGCCGAACCTTCTGGCGGCTGGGATGT 6 118 1 GATCTGCTTCTGCCTCAAAACTGAT 6 167 0 CACCCGCACCACGCGGGTGTTTTTT 9 4 1 TTAATGTTATCCCCCCTGCTGCTATATAATC 10 26 0 TGCGTCCATGCCGCATTCCTTCA 12 2 1 CATTGCCATCAGCCTCTGCTGTCGGAATGGA 12 49 0 AAAAAGCGCCCGCGTATGCCGGGCGCTTTTT 16 13 1 ATTTTATAATCGCTCCAGCGTAAAATCAATA 16 118 0 AAAGAAATATCGCGCCTCCCTAAAGGCGCGA 19 19 0 TTTTTATATACCCCCCAGGTGTATATAAAGG 19 52 1 *** ******* MAP Score: 12.5326 Motif 6 TCAAGTATAGAAAAAACAGCGATCATGCGT 0 46 1 CTCGTACGGATAAAGGCAGCGTTTC 1 25 1 AGCAAGGAAAAAACCAAAAGGCCAATG 3 7 1 CAAAAAAACCAAAAGGCCGACATTGGCCTT 3 27 0 AAAATCTCACAAAATAGAAAATGGGGGTAC 3 163 1 GAGTAGAATGGAAAAGGGGATCGGAAAACA 4 83 1 AAAGAAAAAGGCAGACGCGGTCTGC 5 5 1 TGAAAATAAAAAAAGGCAGACCGCGTCTGC 5 20 0 ATCTAGGTAGAAAGGACGGCTGGTGCT 5 109 1 TAAAAATACAAAAAAACCAAATTATTTACT 7 79 1 ATACGATGGCAAAAAGGCAAGACAAAAAGG 7 125 1 AAGGCAAGACAAAAAGGGGAGTAAGGGAGA 7 138 1 TTTGTTGGAAGAAAAAGAAATACTCTGGAA 9 124 1 TTTCCCTGATAAAATGGCGAAACTCCTAAT 10 110 0 TATAACAGAAGAAAGAACAAAGAGGTGATA 11 124 1 ATTGGCATTAGAAAGAGGGCAGAAAACATT 12 111 1 TTTTCCGAAAAAAAAGCAGAAAACATAATG 12 137 0 ATGTAAATAGAAAAAAGAGAAGGACTCCCT 14 15 0 TAGCAAAAAAACCGATTTCGAAGTG 15 5 1 ATTATGCAGAAAAAAACCGATTTCACTTCG 15 28 0 CAAAAAAAGCGCCCGCGTATGC 16 2 1 TTGCGAAATTAAAAAAGCGCCCGGCATACG 16 25 0 TAACAAACATAAAAGGGAGTCATCAGA 16 169 1 AAGTGTCAATGAAAAACAAAAACCGGCATA 18 21 0 GATACGCTTTGAAGAGGGAACCCTAAATCG 18 130 1 TGGTAGGATGAAAATAGAAAGAATAAACAG 20 42 1 ********** MAP Score: 4.83574 Motif 7 TCAAGTATAGAAAAAACAGCGATCATGCGTCA 0 46 1 AATCATGACCATGAAAGGGAAATGTAGTCAAA 0 94 1 TATAGAAAACATGAAGGAGGAATATCGAC 2 16 1 AAAGAAAAAGGCAGACGCGGTCTG 5 2 1 GAGTGAAAATAAAAAAAGGCAGACCGCGTCTG 5 21 0 CCATTTTCTTACGAAGGAGTGAAAATAAAAAA 5 37 0 ATCAGTTTTGAGGCAGAAGCAGATC 6 167 1 AAAAGGCAAGACAAAAAGGGGAGTAAGGGAGA 7 136 1 ATGAAGTGATGTGAAGGGGAGAGTTTGTTGGA 9 101 1 AGTTTGTTGGAAGAAAAAGAAATACTCTGGAA 9 122 1 TCAGGAATTGGGAAAGGAGGAGGAA 9 184 1 AGAAGAAAGAACAAAGAGGTGATATCAGACAG 11 130 1 GCTGATGGCAATGCAGCAGCAAAGGCTGTATG 12 67 1 TTTTCCGAAAAAAAAGCAGAAAACATAATGTT 12 135 0 ATGTAAATAGAAAAAAGAGAAGGACTCCCTTC 14 13 0 TCTTGTTAAAATAAAGAAGTGGGTCAATTGCG 17 57 1 TTTAAAATTAAAAAAGAAGCGGATCGCAATTG 17 81 0 CCAGGTGTATATAAAGGAGTGAGT 19 66 1 AAATAGAAAGAATAAACAGGAGGAATTGAT 20 53 1 * ******* ** MAP Score: 4.66922 Motif 8 AAATAGAAGGCATTTCATACGGAAAGGAATGGTT 0 123 1 TCTTTGCGGTGGGATTTTGCAGAATGCCGCAATA 3 60 1 TAGCGGAACATTTTCGGTTCTGAATGTCCCTCAA 3 97 1 ATAGAAATTGTCGTCCCTGCCGAACCTTCTGGCG 6 105 1 GATCCAATCAGTTTTGAGGCAGAAGCAGATC 6 161 1 TCCCGGGATTTTTTTCATGCCGAAAATTGATCAA 7 20 1 TCATTGTATCGTTTTTAAGCGGCAAGACAAATGA 9 62 0 GAAGCGAAAGCGTTTATTGCCGCATGCTATCAGG 9 155 1 ATCAGGGAAAGAGTTTAGGCAGCAAAATGATTAA 10 130 1 TGCGTCCATGCCGCATTCCTTCAAA 12 1 1 ATACATACAGCCTTTGCTGCTGCATTGCCATCAG 12 68 0 ATGTTTTCTGCTTTTTTTTCGGAAAAAAATGAAA 12 141 1 AAGTGAAATCGGTTTTTTTCTGCATAATATAAAT 15 30 1 ACTGATTCATTTTTTGCGTCGGCATGCTTAGACA 21 48 1 * *** *** *** MAP Score: 3.76332