AlignACE 3.0 10/20/99
AlignACE2 -i BS/BS_sum_all083_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944234441
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	citM	195	secondary transporter of the Mg2+/citrate complex
#1	yflN	55	yflN
#2	pksB	189	pksB
#3	yobT	76	similar to hypothetical proteins
#4	yobU	53	yobU
#5	yobV	205	similar to hypothetical proteins
#6	yqgX	157	similar to hypothetical proteins
#7	yrkH	128	similar to hypothetical proteins
#8	yybB	146	similar to hypothetical proteins

Motif 1
TTTAAAACCGTTTTGTTCTTTTTGATCAATTT	0	43	0
TTTTTTGTATTTTTAATTTTTTAAAACCGTTT	0	62	0
AAGTAAATAATTTGGTTTTTTTGTATTTTTAA	0	78	0
ATTATTTACTTGCGGTTGGTTTTCCCATACGA	0	99	1
ATGAATCCGCTTACATTTTTTTCTCCCTTACT	0	157	0
GAATGTTGTATGCCGTTAGTGTGTGTCATTAC	1	20	0
CATGATTGTTTTCCATTTTTTTCAGAGATCCT	2	81	0
ACCATTAGTTTTTCAAGAGTTTA         	3	1	0
GAAAAACTAATGGTGTTAGTTAATAATAAAAC	3	19	1
CAAAAACTAATGGTGTTAGTTTTATTATTAAC	3	37	0
TATCAAAATGTTATGATTGTTTTGTTGGAAAA	5	160	1
GCGGTTTTCATTGCGATTGTTTGAATCTTTTT	6	88	1
TATGCTCTTATTATGAGGGTTTTTGAAAAAAG	6	114	0
ATGTTCCTTATTTTGATCTTTTAGATGGCGTA	7	34	1
GATAAAGAAGTGCTGGTCGTTTGCGCAAAAGA	7	93	1
GTCCGTTCACTTCTGTTTTCTTTAAAACTATC	8	97	1
TGTGGAAATTTTTTGATAGTTTTAAAGAAAAC	8	111	0
          ** **** ****
MAP Score: 16.1241

Motif 2
CCTTTTTGTCTTGCCTTTTTGCCATCGTATGG	0	123	0
TCTCCCTTACTCCCCTTTTTGTCTTGCCTTTT	0	136	0
ATGAATCCGCTTACATTTTTTTCTCCCTTACT	0	157	0
TCCAAAAGAGTCGCTTTTTTATTTTCAAAGAA	2	47	1
CATGATTGTTTTCCATTTTTTTCAGAGATCCT	2	81	0
   ACGATCTCCTCCTTTTTTTAAGATTATAG	4	34	0
GGGGTTTCCCCTTCTTTTTTGTGTTCAGTATT	5	72	0
GAAGGGGAAACCCCTGTTTTCATAGCATATGC	5	90	1
CTGGAAACAATTGCAGGTTTTTCAATGTAAAG	6	21	0
CTGCAATTGTTTCCAGTTTTATTCTACCTGTT	6	37	1
CAGTTTTATTCTACCTGTTTTTTATAGGTTTG	6	50	1
TTATCACCTCTTTCTTTTTTATGCTCTTATTA	6	133	0
AGTCCGTTCACTTCTGTTTTCTTTAAAACTAT	8	96	1
          ** ******* *
MAP Score: 15.6702

Motif 3
CGAAAATTGATCAAAAAGAACAAAACGGTTTTAAAAAA	0	40	1
ACAAAACGGTTTTAAAAAATTAAAAATACAAAAAAACC	0	59	1
GGAGTAAGGGAGAAAAAAATGTAAGCGGATTCATTTAA	0	155	1
TCCTTGTTCTTTGAAAATAAAAAAGCGACTCTTTTGGA	2	47	0
CAAGGATCTCTGAAAAAAATGGAAAACAATCATGCTGT	2	79	1
TGTCTATAATCTTAAAAAAAGGAGGAGATCGT      	4	31	1
AAATACTGAACACAAAAAAGAAGGGGAAACCCCTGTTT	5	71	1
ATTGTTTTGTTGGAAAATACAAGAAGAAAAGGTGCGCA	5	175	1
GACAAACCTATAAAAAACAGGTAGAATAAAACTGGAAA	6	46	0
GAGGGTTTTTGAAAAAAGATTCAAACAATCGCAATGAA	6	94	0
AATAAGAGCATAAAAAAGAAAGAGGTGATAATA     	6	134	1
TTCTACGCCATCTAAAAGATCAAAATAAGGAACATTCA	7	31	0
TTGATAGTTTTAAAGAAAACAGAAGTGAACGGACTATT	8	93	0
          *  **** *   ***  *
MAP Score: 11.7347

Motif 4
AACAAGGATCTCTGAAAAAAATGGAAAACAATCATGCTGTT	2	77	1
TATGAGGGTTTTTGAAAAAAGATTCAAACAATCGCAATGAA	6	94	0
CACTTCTGTTTTCTTTAAAACTATCAAAAAATTTCCACAGG	8	104	1
ACCATCCCTATCATGTAAAGTTCTTAAACGATGGACCAGTG	2	154	0
AGAACAAAACGGTTTTAAAAAATTAAAAATACAAAAAAACC	0	56	1
TAAAAAACAGGTAGAATAAAACTGGAAACAATTGCAGGTTT	6	33	0
TATCTTCTACGCCATCTAAAAGATCAAAATAAGGAACATTC	7	32	0
TCAAAAACCCTCATAATAAGAGCATAAAAAAGAAAGAGGTG	6	120	1
AAGACAAAAAGGGGAGTAAGGGAGAAAAAAATGTAAGCGGA	0	143	1
TCAGGTTTCTTTGTCTATAATCTTAAAAAAAGGAGGAGATC	4	20	1
AAACTAATGGTGTTAGTTAATAATAAAACTAACACCATTAG	3	22	1
AGATCCTTGTTCTTTGAAAATAAAAAAGCGACTCTTTTGGA	2	47	0
TCTTGTATTTTCCAACAAAACAATCATAACATTTTGATAAA	5	158	0
TTTCCCATACGATGGCAAAAAGGCAAGACAAAAAGGGGAGT	0	119	1
TGAAAACCGCTATCGACAAACCTATAAAAAACAGGTAGAAT	6	57	0
          *     ****     **** *
MAP Score: 10.6319

Motif 5
ATTTTCGGCATGAAAAAAATCCCGGGATGT	0	17	0
TTTTAATTTTTTAAAACCGTTTTGTTCTTT	0	54	0
CCATCGTATGGGAAAACCAACCGCAAGTAA	0	104	0
GGAGTAAGGGAGAAAAAAATGTAAGCGGAT	0	155	1
CAAGGATCTCTGAAAAAAATGGAAAACAAT	2	79	1
TGAAAAAAATGGAAAACAATCATGCTGTTT	2	89	1
GACTGAGGGGTGAACACTGGTCCATCGTTT	2	140	1
GTCTATAATCTTAAAAAAAGGAGGAGATCG	4	32	1
AAATAGTAGCTGAAATAAATACTGAACACA	5	55	1
AAATAAATACTGAACACAAAAAAGAAGGGG	5	67	1
GCATATGCTATGAAAACAGGGGTTTCCCCT	5	92	0
GTATTTTCCAACAAAACAATCATAACATTT	5	165	0
AGAATAAAACTGGAAACAATTGCAGGTTTT	6	32	0
TGAGGGTTTTTGAAAAAAGATTCAAACAAT	6	103	0
TAATAAGAGCATAAAAAAGAAAGAGGTGAT	6	133	1
ATAGTTTTAAAGAAAACAGAAGTGAACGGA	8	98	0
          **********
MAP Score: 3.89093

Motif 6
GAACAAAACGGTTTTAAAAAATTAAAAATACAAAAAAACCAA	0	57	1
TGTCTTGCCTTTTTGCCATCGTATGGGAAAACCAACCGCAAG	0	107	0
AGCATGATTGTTTTCCATTTTTTTCAGAGATCCTTGTTCTTT	2	73	0
        CTTTTTATTCCTCCTAACAAAAACTAATGGTGTT	3	52	0
GATCTCCTCCTTTTTTTAAGATTATAGACAAAGAAACCTGAC	4	19	0
TTCTACCTGTTTTTTATAGGTTTGTCGATAGCGGTTTTCATT	6	58	1
CATTGCGATTGTTTGAATCTTTTTTCAAAAACCCTCATAATA	6	96	1
ATTTTGATCTTTTAGATGGCGTAGAAGATATCTTGGAGAAAA	7	43	1
TGTGGAAATTTTTTGATAGTTTTAAAGAAAACAGAAGTGAAC	8	101	0
          ****       **   ** * *
MAP Score: 2.77287

Motif 7
AACAAAACGGTTTTAAAAAATTAAAAATACAAAAAAACCAA	0	58	1
CAATCATGCTGTTTGGTAAAGTGGAATGAAAGACGGACTGA	2	105	1
CTGGTCCATCGTTTAAGAACTTTACATGATAGGGATGGTAT	2	156	1
AATGGTGTTAGTTTTATTATTAACTAACACCATTAGTTTTT	3	20	0
ACACCATTAGTTTTTGTTAGGAGGAATAAAAAG        	3	53	1
AATCATAACATTTTGATAAAGCTTGGGCATATCTATTATGC	5	137	0
TGTTATGATTGTTTTGTTGGAAAATACAAGAAGAAAAGGTG	5	168	1
TTTGAATCTTTTTTCAAAAACCCTCATAATAAGAGCATAAA	6	107	1
TATTTTGATCTTTTAGATGGCGTAGAAGATATCTTGGAGAA	7	42	1
TGTGGAAATTTTTTGATAGTTTTAAAGAAAACAGAAGTGAA	8	102	0
          **** * **      *  * *
MAP Score: 0.937688