AlignACE 3.0 10/20/99
AlignACE2 -i WIT_ctrl_PID138_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	943392191
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	mog	114	required for the efficient incorporation of molybdate into molybdoproteins
#1	moaA	300	molybdopterin biosynthesis, protein A
#2	moaB	21	molybdopterin biosynthesis, protein B
#3	moeA	203	molybdopterin biosynthesis

Motif 1
   TCATTCTTAGCGTGACCGGGAAGTCGGT	0	7	1
TCAGAAGAGGTAGCGTGACCGACTTCCCGGT	0	24	0
TCATTCTGTTTAACGAGACTGTTTAAACGGA	0	84	1
CCTTATTCTGTAGCGAAATAGCACGATCATG	1	79	1
CATGATTACATAGCGAAAGTGTGGATGGTAA	1	120	1
CTGATATTTATAGCAAAAGTGGCGAACCACC	3	27	0
TTTTTGAATATAGAAAGATGGATATGGCATG	3	82	1
          ********* *
MAP Score: 9.48381

Motif 2
 TCATTCTTAGCGTGACCGGGAAGTCGGTCACG	0	9	1
TGACAGACAGGCTTCAGAAGAGGTAGCGTGACC	0	35	0
AGAATGATACACTGCGAAGGGAGTGACAGACAG	0	58	0
       TCTACCTCTAAAGGACGATGCACGCT	1	3	1
ACTTTGATATACATCATCAGGGAGGCATAGCGT	1	31	0
GTGCTATTTCGCTACAGAATAAGGGAAAATGGC	1	70	0
GCCGATACTAGCGTGTAAATGAGATTTTTACCA	1	145	0
         AACGTCAAAAGGAGAGATCAG   	2	1	1
GATGGATATGGCATGTAAAGGCAGGACCCAGCG	3	98	1
CAGACTGTATGCCACCTCGGGCGTAGCGCTGGG	3	124	0
ATTCGATTTTGCCTCCGCAGGAGTGTTTTC   	3	183	1
          ** **  ******
MAP Score: 6.05402

Motif 3
AGACTGTTTAAACGGAAAAATCTTG       	0	99	1
GATGTATATCAAAGTAAAACCGCCATTTTCCC	1	49	1
GCTACAGAATAAGGGAAAATGGCGGTTTTACT	1	61	0
ACATGATTACATAGCGAAAGTGTGGATGGTAA	1	119	1
GAAAGTGTGGATGGTAAAAATCTCATTTACAC	1	134	1
CACCAGGGCGAAGGAAGAAATGACTTCGCCTC	1	258	1
          AACGTCAAAAGGAGAGATCAG 	2	0	1
TCTGATATTTATAGCAAAAGTGGCGAACCACC	3	27	0
ATTTTTGAATATAGAAAGATGGATATGGCATG	3	81	1
ATGGCATGTAAAGGCAGGACCCAGCGCTACGC	3	105	1
TTCTGACATAATAGGCAAATTCGATTTTGCCT	3	165	1
          **** **** **
MAP Score: 5.87957

Motif 4
TAGCGTGACCGACTTCCCGGTCACGCTAAGAATGA      	0	4	0
AGAATAAGGGAAAATGGCGGTTTTACTTTGATATACATCAT	1	47	0
ACCACTAAACACTCTAGCCTCTGCACCTGGGTCAACTGATA	1	181	1
AATGCTCGTAAAGATTGCCACCAGGGCGAAGGAAGAAATGA	1	240	1
AGGAAGAAATGACTTCGCCTCCCGTATCTGGAAAGGTGTAC	1	269	1
ATTTATAGCAAAAGTGGCGAACCACCCTTAATGGACGAATA	3	12	0
TAGAAAGATGGATATGGCATGTAAAGGCAGGACCCAGCGCT	3	92	1
CGCTACGCCCGAGGTGGCATACAGTCTGTGGCGTTTTTCTG	3	129	1
AGGCAAAATCGAATTTGCCTATTATGTCAGAAAAACGCCAC	3	156	0
AGGCAAATTCGATTTTGCCTCCGCAGGAGTGTTTTC     	3	177	1
          **  * ***  *   *   **
MAP Score: 3.62363

Motif 5
  TCATTCTTAGCGTGACCGGGAAGTCGGT	0	8	1
CAGAAGAGGTAGCGTGACCGACTTCCCGGT	0	24	0
CCTCTTCTGAAGCCTGTCTGTCACTCCCTT	0	45	1
CATTCTGTTTAACGAGACTGTTTAAACGGA	0	85	1
ATGATTACATAGCGAAAGTGTGGATGGTAA	1	121	1
CCGAGGTGGCATACAGTCTGTGGCGTTTTT	3	137	1
          **********
MAP Score: 1.94651

Motif 6
GAAGAGGTAGCGTGACCGACTTCCCGGTCACGCTAAGAATGA    	0	6	0
CTCTAAAGGACGATGCACGCTATGCCTCCCTGATGATGTATATCAA	1	15	1
GTAAAACCGCCATTTTCCCTTATTCTGTAGCGAAATAGCACGATCA	1	62	1
CGAAATAGCACGATCATGACGCTATATACATGATTACATAGCGAAA	1	92	1
GAGTGTTTAGTGGTTATGCCGATACTAGCGTGTAAATGAGATTTTT	1	149	0
AACCACTAAACACTCTAGCCTCTGCACCTGGGTCAACTGATACGGT	1	180	1
GAGGCGAAGTCATTTCTTCCTTCGCCCTGGTGGCAATCTTTACGAG	1	244	0
TCGGGCGTAGCGCTGGGTCCTGCCTTTACATGCCATATCCATCTTT	3	95	0
TAGGCAAATTCGATTTTGCCTCCGCAGGAGTGTTTTC         	3	176	1
          ** *    *** * *      *   *
MAP Score: 1.42158