AlignACE 3.0 10/20/99
AlignACE2 -i WIT_ctrl_PID138_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	943392594
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	talB	278	transaldolase B
#1	mog	114	required for the efficient incorporation of molybdate into molybdoproteins
#2	moaA	300	molybdopterin biosynthesis, protein A
#3	moaB	21	molybdopterin biosynthesis, protein B
#4	moeA	203	molybdopterin biosynthesis

Motif 1
CAGGAAAGTCATCGCGACCGGCAATAAGAG	0	18	0
GTTATCGCCAGGCGAGACTGTTTCGGATTT	0	163	0
ACGCAACGTCAGCGCAACCGCCGACAAGAC	0	194	0
  TCATTCTTAGCGTGACCGGGAAGTCGGT	1	8	1
CAGAAGAGGTAGCGTGACCGACTTCCCGGT	1	24	0
CATTCTGTTTAACGAGACTGTTTAAACGGA	1	85	1
TGTATATCAAAGTAAAACCGCCATTTTCCC	2	51	1
CTTATTCTGTAGCGAAATAGCACGATCATG	2	80	1
ATGATTACATAGCGAAAGTGTGGATGGTAA	2	121	1
CAGGTGCAGAGGCTAGAGTGTTTAGTGGTT	2	180	0
TGATATTTATAGCAAAAGTGGCGAACCACC	4	27	0
CTCCTGCGGAGGCAAAATCGAATTTGCCTA	4	176	0
          **********
MAP Score: 12.8517

Motif 2
TCTTATTGCCGGTCGCGATGACTTTCCTGTGT	0	19	1
TATAAAAATGGCGGGCGATATCAACGCAGTGT	0	128	1
AACAGTCTCGCCTGGCGATAACCGTCTTGTCG	0	171	1
TCAGCGCAACCGCCGACAAGACGGTTATCGCC	0	184	0
GATGATATCACGACGCAACGTCAGCGCAACCG	0	204	0
TTCTTAGCGTGACCGGGAAGTCGGTCACGCTA	1	13	1
AAAGGACGATGCACGCTATGCCTCCCTGATGA	2	19	1
CGAGCATTGTCACGGCCAAAGCACCGTATCAG	2	216	0
AGATTGCCACCAGGGCGAAGGAAGAAATGACT	2	251	1
TCCAGATACGGGAGGCGAAGTCATTTCTTCCT	2	269	0
AATATAGAAAGATGGATATGGCATGTAAAGGC	4	88	1
AGGCAGGACCCAGCGCTACGCCCGAGGTGGCA	4	116	1
ACACTCCTGCGGAGGCAAAATCGAATTTGCCT	4	177	0
          ** ******* *
MAP Score: 9.09876

Motif 3
GGTTATCGCCAGGCGAGACTGTTTCGGATTT	0	163	0
ACCGTCTTGTCGGCGGTTGCGCTGACGTTGC	0	191	1
TGATATCATCAGGGCAGACCGGTTACATCCC	0	226	1
ACAGCTTGTTAGGGGGATGTAACCGGTCTGC	0	239	0
TTAGCGTGACCGGGAAGTCGGTCACGCTACC	1	16	1
CTACAGAATAAGGGAAAATGGCGGTTTTACT	2	61	0
CCAGGTGCAGAGGCTAGAGTGTTTAGTGGTT	2	180	0
AGCATTGTCACGGCCAAAGCACCGTATCAGT	2	215	0
GATTGCCACCAGGGCGAAGGAAGAAATGACT	2	252	1
TCGTCCATTAAGGGTGGTTCGCCACTTTTGC	4	15	1
TGGCATGTAAAGGCAGGACCCAGCGCTACGC	4	106	1
TATGCCACCTCGGGCGTAGCGCTGGGTCCTG	4	119	0
ACTCCTGCGGAGGCAAAATCGAATTTGCCTA	4	176	0
GATTTTGCCTCCGCAGGAGTGTTTTC     	4	187	1
          **** ******
MAP Score: 7.09713

Motif 4
AAGTCATCGCGACCGGCAATAAGAGGGATATGC         	0	1	0
GTATAAAAATGGCGGGCGATATCAACGCAGTGTCAGAAATCC	0	127	1
AAACAGTCTCGCCTGGCGATAACCGTCTTGTCGGCGGTTGCG	0	170	1
CGGGAAGTCGGTCACGCTACCTCTTCTGAAGCCTGTCTGTCA	1	26	1
TCTGAAGCCTGTCTGTCACTCCCTTCGCAGTGTATCATTCTG	1	50	1
TAAAGGACGATGCACGCTATGCCTCCCTGATGATGTATATCA	2	18	1
CCACTAAACACTCTAGCCTCTGCACCTGGGTCAACTGATACG	2	182	1
TCGCCCTGGTGGCAATCTTTACGAGCATTGTCACGGCCAAAG	2	227	0
TAAAGGCAGGACCCAGCGCTACGCCCGAGGTGGCATACAGTC	4	113	1
          * *  **  *  *  *   ***
MAP Score: 2.91356

Motif 5
GGTTATCGCCAGGCGAGACTGTTTCGGATT	0	164	0
TGATATCATCAGGGCAGACCGGTTACATCC	0	226	1
ACTGTTTAAACGGAAAAATCTTG       	1	101	1
ACGCTAGTATCGGCATAACCACTAAACACT	2	164	1
AGCATTGTCACGGCCAAAGCACCGTATCAG	2	216	0
TGACAATGCTCGTAAAGATTGCCACCAGGG	2	236	1
CAGATACGGGAGGCGAAGTCATTTCTTCCT	2	269	0
 AACGTCAAAAGGAGAGATCAG        	3	9	1
TGGCATGTAAAGGCAGGACCCAGCGCTACG	4	106	1
CTGACATAATAGGCAAATTCGATTTTGCCT	4	167	1
ACTCCTGCGGAGGCAAAATCGAATTTGCCT	4	177	0
          **********
MAP Score: 1.72001

Motif 6
GTTTTGTATAAAAATGGCGGGCGATATCAA	0	122	1
TCGTGATATCATCAGGGCAGACCGGTTACA	0	223	1
  TCTACCTCTAAAGGACGATGCACGCTAT	2	8	1
GATATACATCATCAGGGAGGCATAGCGTGC	2	29	0
AGAATAAGGGAAAATGGCGGTTTTACTTTG	2	58	0
TATACATGATTACATAGCGAAAGTGTGGAT	2	116	1
AAAGATTGCCACCAGGGCGAAGGAAGAAAT	2	249	1
ACCTTTCCAGATACGGGAGGCGAAGTCATT	2	276	0
TATTCGTCCATTAAGGGTGGTTCGCCACTT	4	12	1
ATTTATAGCAAAAGTGGCGAACCACCCTTA	4	23	0
          **********
MAP Score: 1.28895