AlignACE 3.0 10/20/99 AlignACE2 -i EC_fusions015_100.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 943438053 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 pdhR 300 transcriptional regulator for pyruvate dehydrogenase complex #1 lacI 76 transcriptional repressor of the lac operon #2 mhpR 76 transcriptional regulator for mhp operon #3 farR 108 transcriptional regulator of succinylCoA synthetase operon #4 purR 300 transcriptional repressor for pur regulon, glyA, glnB, prsA, speA #5 ascG 256 ascBF operon repressor #6 yhfM 243 putative amino acid/amine transport protein #7 yhfP 64 orf, hypothetical protein #8 yhfR 33 putative transcriptional regulator #9 gntR 223 regulator of gluconate (gnt) operon #10 rbsK 125 ribokinase #11 cytR 155 regulator for deo operon, udp, cdd, tsx, nupC, and nupG Motif 1 GAGTTCCTGTCTTAAGCCACTTGCCGAAG 0 281 0 ATTGACTCTCTTCCGGGCGCTATCATGCCATACCGC 1 36 0 TCGGCCAAAATTCCACGCTTACACTATTTGCGTACT 4 136 1 CATTGACCCCTTCCTGACGCTCCGTGTCGTTTTTCC 4 175 1 CCGTGTCGTTTTTCCGGCGTACCGCAACACTTTTGT 4 196 1 CCGGTTTAATTGCCCGACGCCCTCTGGATTTTCCGA 6 34 1 GAAAATATTTTTACGGGCGGGGGCAAGAAGGACATA 6 85 0 TTAGGTTCTCTGCCAGCCGTCCCCAGATAACA 7 6 0 TTTTGCAGGCTTCCTCGCTCGCTCCGGTCGCGTGCT 9 38 1 TGATGTACGCTTCCGGGGTTTTGCCGCGTCGTTAGC 9 73 1 CATCAGAACCTTCCCGGGGAAAACAGTGCTTGTTTA 9 149 0 CCGCTCACGATGCGAGGCGGATCGAAAAATTCAATA 11 11 1 CTGTAACCGTTTTCACGCGCTATCTGCTAAAAATGT 11 71 1 ACGCCTGACGTGCCAGGCGAGGAGTGAGT 11 136 1 **** **** * * MAP Score: 13.55 Motif 2 GGTATGGCATGATAGCGCCCGGAAGAGAGTCAA 1 38 1 GACAAAATGTCGTTGCGCGCACAGTACAGCGCA 2 29 1 TACGCAAATAGTGTAAGCGTGGAATTTTGGCCG 4 137 0 AAAAACGACACGGAGCGTCAGGAAGGGGTCAAT 4 176 0 AAAAGTGTTGCGGTACGCCGGAAAAACGACACG 4 197 0 AGGAGCTGAAGTTAGGGTCTGGAGTGAAATGGA 4 277 1 ACACTGCGTTGATTGCGTGTAAAGGGATGAAA 5 234 1 GGAAAATCCAGAGGGCGTCGGGCAATTAAACCG 6 35 0 CGAACTGTGTGAGTACGCGGAAAACATCGGC 7 43 1 GTATAACGTTGGCGTGAGCATCTTCACGCC 8 7 1 GTTGGCGTGAAGATGCTCACGCC 8 20 0 CACGCGACCGGAGCGAGCGAGGAAGCCTGCAAA 9 39 0 CGCTCGCTCCGGTCGCGTGCTGATGTACGCTTC 9 53 1 ACCGTGTTAGGGTGGCGCGTGCCCTGCTTTTCT 10 77 0 ATTTTTAGCAGATAGCGCGTGAAAACGGTTACA 11 72 0 * * ***** *** MAP Score: 13.3251 Motif 3 TCCGAATTGAACCGATTCACTTACCAATTTT 0 49 0 AATTGGTCTTACCAATTTCATGTCTGTGACG 0 248 0 AATTGGTAAGACCAATTGACTTCGGCAAGTG 0 262 1 TATGTGATCAATTTCACTTGATTGAAA 3 6 1 AAGTGTTTTTACCACTTCCCCTTTTCGTCAA 4 103 1 TCGCAAGGTAAACGTTTGCCTTTACACACCT 4 240 0 GAATTAAGAAACCGGTTTCACAAAATCATGA 5 88 1 TATTCAGGTGACCGGTTTCACAAATATAAAA 5 159 0 AGTGTACTGCACCGTTTGCCGATTGTCCTTG 5 208 0 ATCGGCTAACACCGGTTTAATTGCCCGACGC 6 23 1 TATACACTAAATCAATTGCATCGCATTGTGC 9 107 0 GTAAACAAGCACTGTTTTCCCCGGGAAGGTT 9 148 1 AAATTCTGTAACCGTTTTCACGCGCTATCTG 11 66 1 **** ****** MAP Score: 10.8814 Motif 4 AAGGTGAATACTTTGTTACTTTAGCGTCACAGACATGAA 0 224 1 GAGTTCCTGTCTTAAGCCACTTGCCGAAGTCAATTGGTC 0 271 0 CATGCCATACCGCGAAAGGTTTTGCGCCATTCGATGGTG 1 10 0 ACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTA 2 15 0 AGTGTTTTTACCACTTCCCCTTTTCGTCAAGATCGGCCA 4 104 1 GCGTACTGGCCATTGACCCCTTCCTGACGCTCCGTGTCG 4 165 1 TCCTGACGCTCCGTGTCGTTTTTCCGGCGTACCGCAACA 4 186 1 CAAACGTTTACCTTGCGATTTTGCAGGAGCTGAAGTTAG 4 253 1 TCCGTTTCAGCATCGGCATTTTTCCGTCACGTCGACTGA 5 51 0 AACCGGTCACCTGAATATTTTTCCCGCCGATTGTGCAAG 5 173 1 TCGGCTAACACCGGTTTAATTGCCCGACGCCCTCTGGAT 6 24 1 TTGCCCGACGCCCTCTGGATTTTCCGAGGGCGTATTTGT 6 43 1 TATTTGTTTCTATGTCCTTCTTGCCCCCGCCCGTAAAAA 6 75 1 ATAACGTTGGCGTGAGCATCTTCACGCCAAC 8 12 1 CTGATGTACGCTTCCGGGGTTTTGCCGCGTCGTTAGCAC 9 72 1 TAATTGTAAACAAGCACTGTTTTCCCCGGGAAGGTTCTG 9 143 1 CATGAAAATTCTGTAACCGTTTTCACGCGCTATCTGCTA 11 61 1 * * *** *** ** MAP Score: 10.5464 Motif 5 AAAATCCGAATTGAACCGATTCACTTACCAATTT 0 50 0 TCATGAAACTGTGCACATTTTAACAACTTGACAT 0 165 0 TATGTGATCAATTTCACTTGATTGAAA 3 3 1 ACGGAATTAAGAAACCGGTTTCACAAAATCATGA 5 85 1 AAATATTCAGGTGACCGGTTTCACAAATATAAAA 5 159 0 TAACGTTGGCGTGAGCATCTTCACGCCAAC 8 13 1 TGAAAATTCTGTAACCGTTTTCACGCGCTATCTG 11 63 1 **** * ***** MAP Score: 9.25158 Motif 6 GAATGAATTTAAATTCGTTTT 0 0 1 AATTCGTTTTAATTGAATTAAAAATCACAAA 0 21 1 CAAAATTGGTAAGTGAATCGGTTCAATTCGG 0 48 1 TACAGGTTTTGATTGAAATCATGAAACTGTG 0 186 0 CCACTTGCCGAAGTCAATTGGTCTTACCAAT 0 263 0 GCCCGGAAGAGAGTCAATTCAGGGTGGTGAA 1 54 1 AATTTCAATCAAGTGAAATTGATCACATA 3 8 0 AATTTCACTTGATTGAAATTATTTGTATTGT 3 19 1 ACCACACAAAAAGTGATATTACGCATTTTTA 4 33 1 TTAGGGTCTGGAGTGAAATGGA 4 288 1 ATAAGCAAGAGAGTGAATTGTTCATTTTTTA 5 133 1 ATTGAATTTAAAGTGAAAATATTTTTACGGG 6 104 0 GTAGTTATCAAATTGAATTTAAAGTGAAAAT 6 115 0 AATGCGATGCAATTGATTTAGTGTATATCTA 9 111 1 ********* * MAP Score: 6.53964 Motif 7 GGTATGGCATGATAGCGCCCGGAAGAGAGTCA 1 38 1 ACGACATTTTGTCCGAGTCGTGAGGTACTGAA 2 10 0 ACTGGCCATTGACCCCTTCCTGACGCTCCGTG 4 169 1 GGAAAATCCAGAGGGCGTCGGGCAATTAAACC 6 36 0 TGTCCTTCTTGCCCCCGCCCGTAAAAATATTT 6 87 1 TTTCGCACAGGATCGCGCTGTGGCTAATGGAT 6 146 0 GCGTACATCAGCACGCGACCGGAGCGAGCGAG 9 51 0 GCGTGCTGATGTACGCTTCCGGGGTTTTGCCG 9 67 1 GGACACATCAGAACCTTCCCGGGGAAAACAGT 9 158 0 TGTTAGGGTGGCGCGTGCCCTGCTTTTCTTTA 10 74 0 * ********* MAP Score: 6.29447 Motif 8 ACAGTTTCATGATTTCAATCAAAACCTGTATGGACATA 0 187 1 CGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAA 2 10 0 CTCCTTTTTTATTACCACACAAAAAGTGATATTACGCA 4 20 1 GTGATATTACGCATTTTTACACACTGTGATGAAAAAAT 4 45 1 GCCATTGACCCCTTCCTGACGCTCCGTGTCGTTTTTCC 4 173 1 CAATTAAACCGGTGTTAGCCGATTTCTGTCAGAGAC 6 8 0 CACCGGTTTAATTGCCCGACGCCCTCTGGATTTTCCGA 6 32 1 ACAAAATTTCGCACAGGATCGCGCTGTGGCTAATGGAT 6 146 0 TGTTATCTGGGGACGGCTGGCAGAGAACC 7 1 1 GGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTACGCG 7 24 1 GCCGATGTTTTCCGCGTACTCACACAGTTCG 7 43 0 CTTCCTCGCTCGCTCCGGTCGCGTGCTGATGTACGCTT 9 47 1 TACACTAAATCAATTGCATCGCATTGTGCTAACGACGC 9 98 0 TGAATTTTTCGATCCGCCTCGCATCGTGAGCGGT 11 6 0 TTCTGTAACCGTTTTCACGCGCTATCTGCTAAAAATGT 11 69 1 GTACGCCTGACGTGCCAGGCGAGGAGTGAGT 11 134 1 * * ** *** *** MAP Score: 6.09618 Motif 9 AAAATCCGAATTGAACCGATTCACTTACCAATTT 0 50 0 CGTTTCAAAGTTGTAACTATGCACAAATGTAGAC 0 125 0 ATGTCAAGTTGTTAAAATGTGCACAGTTTCATGA 0 165 1 TATGTGATCAATTTCACTTGATTGAAA 3 3 1 CGTTTTTCCGGCGTACCGCAACACTTTTGTTGTG 4 202 1 CAAGGTAAACGTTTGCCTTTACACACCTTACGCA 4 234 0 TTTTATATTTGTGAAACCGGTCACCTGAATATTT 5 159 1 TAACGTTGGCGTGAGCATCTTCACGCCAAC 8 13 1 AACCCCGGAAGCGTACATCAGCACGCGACCGGAG 9 59 0 TATCTAATAATTGTAAACAAGCACTGTTTTCCCC 9 136 1 ATTCTCTTAGTTTAACACGGACACATCAGAACCT 9 174 0 CAGATAGCGCGTGAAAACGGTTACAGAATTTTCA 11 63 0 ******* *** MAP Score: 5.83187 Motif 10 TATGTGATCAATTTCACTTGATTGAAA 3 6 1 AGTGATATTACGCATTTTTACACACTGTGAT 4 44 1 TATAATGATAAGTGTTTTTACCACTTCCCCT 4 94 1 GACGCTCCGTGTCGTTTTTCCGGCGTACCGC 4 190 1 CGGATTTTATCCTGTTATCAGTAGGGTAGAT 5 10 1 GGTAGATGTAGTTGTTATCAGTCGACGTGAC 5 34 1 TTTCAGCATCGGCATTTTTCCGTCACGTCGA 5 55 0 GAATTAAGAAACCGGTTTCACAAAATCATGA 5 88 1 TATTCAGGTGACCGGTTTCACAAATATAAAA 5 159 0 CGGTCACCTGAATATTTTTCCCGCCGATTGT 5 176 1 AGTGTACTGCACCGTTTGCCGATTGTCCTTG 5 208 0 CAATTAAACCGGTGTTAGCCGATTTCTGTCA 6 15 0 CGCCCGTAAAAATATTTTCACTTTAAATTCA 6 102 1 GCCGATGTTTTCCGCGTACTCACA 7 50 0 GTTTTGCCGCGTCGTTAGCACAATGCGATGC 9 90 1 GTAAACAAGCACTGTTTTCCCCGGGAAGGTT 9 148 1 AAATTCTGTAACCGTTTTCACGCGCTATCTG 11 66 1 TCACATCGGCAACATTTTTAGCAGATAGCGC 11 87 0 * ********* MAP Score: 4.43638 Motif 11 TTAAAATGTGCACAGTTTCATGATTTCAATCA 0 176 1 AAAGGTTTTGCGCCATTCGATGGTG 1 3 0 AATGGCGCAAAACCTTTCGCGGTATGGCATGA 1 18 1 AGTTGCGCTGTACTGTGCGCGCAACGACATTT 2 33 0 TTTAACAAAATAAGTTGCGCTGTACTGTGCGC 2 45 0 CGCATTTTTACACACTGTGATGAAAAAATCTC 4 54 1 TCCACGCTTACACTATTTGCGTACTGGCCATT 4 147 1 GGCAAACGTTTACCTTGCGATTTTGCAGGAGC 4 251 1 AACGGTGCAGTACACTGCGTTGATTGCGTGTA 5 223 1 ATCCATTAGCCACAGCGCGATCCTGTGCGAAA 6 146 1 CGCGTACTCACACAGTTCGCTTAGGTTCTCTG 7 30 0 GCGTCGTTAGCACAATGCGATGCAATTGATTT 9 98 1 ACCGCTCACGATGCGAGGCGGATCGAAA 11 6 1 *** ******* MAP Score: 2.52636 Motif 12 TTAAAACGAATTTAAATTCATTC 0 3 0 AAGTGAATCGGTTCAATTCGGATTTTTATA 0 58 1 CATTATGCCCGATAAATTCATCCTGTAAAT 3 59 0 GGGCATAATGGTTAAATTCGTATTAATGAG 3 79 1 TATAAAAAATGAACAATTCACTCTCTTGCT 5 136 0 ATATTTTCACTTTAAATTCAATTTGATAAC 6 113 1 AATTCAATTTGATAACTACATCCATTAGCC 6 127 1 GAGGCGGATCGAAAAATTCAATATTCATCA 11 24 1 CTACATCCATGTTTACTTCACATCGGCAAC 11 105 0 ********** MAP Score: 1.0651 Motif 13 CAATTGACTTCGGCAAGTGGCTTAAGACAGGAA 0 274 1 TTTCGCGGTATGGCATGATAGCGCCCGGAAGAG 1 32 1 ACAAAATAAGTTGCGCTGTACTGTGCGCGCAAC 2 40 0 TGACGCTCCGTGTCGTTTTTCCGGCGTACCGCA 4 189 1 GTTTCAGCATCGGCATTTTTCCGTCACGTCGAC 5 54 0 CCATTAGCCACAGCGCGATCCTGTGCGAAATTT 6 148 1 CATCATGCATTGTCATGTTACCTTTTAA 6 225 1 GCCTGCCTTTTTGCAGGCTTCCTCGCTCGCTCC 9 30 1 AAGCGTACATCAGCACGCGACCGGAGCGAGCGA 9 52 0 TGTACGCTTCCGGGGTTTTGCCGCGTCGTTAGC 9 76 1 CTGTTTTCCCCGGGAAGGTTCTGATGTGTCCGT 9 159 1 CGTGTTAGGGTGGCGCGTGCCCTGCTTTTCTTT 10 75 0 ***** * * *** MAP Score: 0.671167