AlignACE 3.0 10/20/99
AlignACE2 -i EC_operons051_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	943440625
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	ybgC	149	orf, hypothetical protein
#1	tolA	64	membrane spanning protein, required for outer membrane integrity
#2	tolB	132	periplasmic protein involved in the tonb-independent uptake of group A colicins
#3	pal	34	peptidoglycan-associated lipoprotein
#4	b3007	103	orf, hypothetical protein
#5	yiaD	266	putative outer membrane protein

Motif 1
GAATTCTCTTTAAAAAATTATGGGCCGCTCCAGGCC	0	14	1
TAAGGGAGCGTAAAAATTTATGGGCCTGGAGCGGCC	0	36	0
AACATTCTGCTAAATTATCGTGGGCCATCGGTCCAG	2	92	1
TAAACTAGCATGAATATTCGCGGGCGCATCCTGAAG	4	43	1
CCACGCGAGCTAAACACGGTTTCGCCGTCGGTTTCA	5	26	1
GCCGTCGGTTTCAACCAGCATGGGCCCCCAATGGGC	5	49	1
CGGAATATCGTGAGGATGAGTTGGCCAAACCGAAGA	5	96	1
          * **   *  ******
MAP Score: 10.3579

Motif 2
CGCCTGTTACCCGCTCTCTTTCAAGCAAGGGAAACGCAGATG	1	11	0
GACGGTCAACATCAGGCACCGGTTGCCACGGGGTTCTGGTAG	2	29	1
TAACATTCTGCTAAATTATCGTGGGCCATCGGTCCAGATAAG	2	91	1
ATTGGCATAAAGCAGAAAATTTTCGCAAATGGC         	4	80	1
GTGTTTAGCTCGCGTGGCGCGTTAGCCACAGGA         	5	1	0
GCCACGCGAGCTAAACACGGTTTCGCCGTCGGTTTCAACCAG	5	25	1
CACGATATTCCGTTCTGACTGCCGCCCATTGGGGGCCCATGC	5	66	0
CATGTTCACGCGGCATAATCTCCCGCCACGGAACCCGTGGCA	5	205	1
TCCTTAATAACCTTTTTATTCTTTGCCACGGGTTCCGTGGCG	5	228	0
          *      * * *  ****  **
MAP Score: 5.3703

Motif 3
CCTCATTCCCAAACCTCAATCGCGCGCGTATAGTAGCAGCGTT	0	78	1
AAAAGCTCTAACTTTTGTTGCATTACCGGGATGTAAA      	0	122	1
         TCGCGATGTTGACTGTTCGGACGGTCAACATCAG	2	1	1
CATTCTGCTAAATTATCGTGGGCCATCGGTCCAGATAAGGGAG	2	94	1
TTCGCGGGCGCATCCTGAAGAATTGGCATAAAGCAGAAAATTT	4	59	1
CCGACGGCGAAACCGTGTTTAGCTCGCGTGGCGCGTTAGCCAC	5	14	0
AACACGGTTTCGCCGTCGGTTTCAACCAGCATGGGCCCCCAAT	5	38	1
TTGGCCAACTCATCCTCACGATATTCCGTTCTGACTGCCGCCC	5	81	0
AATACATCTAACCTTTCAGGAGTCTTCGGTTTGGCCAACTCAT	5	111	0
TCCCAGGAATAATCTTCATGTTCACGCGGCATAATCTCCCGCC	5	189	1
          *  * **  *  *   ***   *
MAP Score: 2.72954

Motif 4
      TTTACATCCCGGTAATGCAACAAAAGTTAGAGCTTTTA	0	121	0
ACCCGCTCTCTTTCAAGCAAGGGAAACGCAGATGT         	1	1	0
         TCGCGATGTTGACTGTTCGGACGGTCAACATCAGG	2	1	1
GGACGGTCAACATCAGGCACCGGTTGCCACGGGGTTCTGGTAGT	2	28	1
TGTTTTTATACGTCTGGATGTCTAAACTAGCATGAATATTCGCG	4	21	1
TATGCCAATTCTTCAGGATGCGCCCGCGAATATTCATGCTAGTT	4	45	0
         TCCTGTGGCTAACGCGCCACGCGAGCTAAACACGG	5	1	1
CCGTCGGTTTCAACCAGCATGGGCCCCCAATGGGCGGCAGTCAG	5	50	1
AACGGAATATCGTGAGGATGAGTTGGCCAAACCGAAGACTCCTG	5	94	1
CAGGAATAATCTTCATGTTCACGCGGCATAATCTCCCGCCACGG	5	192	1
          * **  * *  **   *  *   *
MAP Score: 1.22221

Motif 5
TTCTCTTTAAAAAATTATGGGCCGCTCCAG	0	17	1
GGGAGCGTAAAAATTTATGGGCCTGGAGCG	0	39	0
AACATTCTGCTAAATTATCGTGGGCCATCG	2	92	1
CATAAAGCAGAAAATTTTCGCAAATGGC  	4	85	1
ATATTACTTACAAATTTCCGAGTATTCCCA	5	164	1
          **********
MAP Score: 0.1965