AlignACE 3.0 10/20/99
AlignACE2 -i EC_operons072_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	943441203
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	mog	114	required for the efficient incorporation of molybdate into molybdoproteins
#1	moaA	300	molybdopterin biosynthesis, protein A
#2	moaB	21	molybdopterin biosynthesis, protein B
#3	b1497	36	putative enzyme
#4	b1498	300	putative sulfatase
#5	yifB	300	putative 2-component regulator

Motif 1
TGTAAATGAGATTTTTACCATCCACACTTTCGCTATGTAA	1	125	0
      CGCGTTGTTTTTAGGCGATATATTTATTGAAATA	4	4	1
TGTTGCATGATTATTTATGATCTCAATTCTGCATTTTGTC	4	85	1
ATGCAATAATTTATTAAATATCAATAAATTAGTTGTTTAT	4	131	1
AATAAATTAGTTGTTTATCGGCGAGAAATTACTTAATAGA	4	153	1
TTACATCCACTTATTTCTCTTCGTAAAATTACT       	4	277	1
ATAGTACAAGATATTTTTTGGCCGATTTTTATGATGCGTT	5	48	1
CACTATTTTATTTTTAAAAAACAACAATTTATATTGAAAT	5	93	0
TGAAATTGAATTTTTTTCACTCACTATTTTATTTTTAAAA	5	114	0
TCGTAGTTCATCCTTTGTCCGCTGCATTTTTGCGAGCATC	5	175	1
          ** ***     *   * ***
MAP Score: 9.47194

Motif 2
GGGCGAAGGAAGAAATGACTTCGCCTCCCGT	1	263	1
ATTTATTGAAATAAATAAGTGACATCCATCA	4	31	1
ATGCAAGTGCATAAATATGTGATGGATGTCA	4	50	0
TTGATATTTAATAAATTATTGCATTTTACTG	4	124	0
TTAAATATCAATAAATTAGTTGTTTATCGGC	4	144	1
TTTATCGGCGAGAAATTACTTAATAGAACAG	4	166	1
TTAATAGAACAGAAAGTAATGTCAACGCTTT	4	185	1
TTTTACGAAGAGAAATAAGTGGATGTAAGTG	4	274	0
TAATTTCAATATAAATTGTTGTTTTTTAAAA	5	91	1
TTTTTTAAAAATAAAATAGTGAGTGAAAAAA	5	112	1
          ******** **
MAP Score: 8.7725

Motif 3
       CAAGATTTTTCCGTTTAAACAGT	0	101	0
AGTAAAACCGCCATTTTCCCTTATTCTGTA	1	61	1
GTGTAAATGAGATTTTTACCATCCACACTT	1	136	0
CTGATACGGTGCTTTGGCCGTGACAATGCT	1	216	1
 CTGATCTCTCCTTTTGACGTT        	2	2	0
TCATGCGGCGGATTTTTCCGCCGCCTTA  	3	18	1
TTTATGGACTGTTTTTTCCCTTTTTTTAGC	4	213	1
TTTTTTGGCCGATTTTTATGATGCGTTTAA	5	61	1
CGTAGTTCATCCTTTGTCCGCTGCATTTTT	5	176	1
TTGTCCGCTGCATTTTTGCGAGCATCATTC	5	189	1
          **********
MAP Score: 8.0484

Motif 4
CGGTGCTTTGGCCGTGACAATGCTCGTAAAGAT	1	222	1
    TAAGGCGGCGGAAAAATCCGCCGCATGAA	3	17	0
TCTGCATTTTGTCAGTAAAATGCAATAATTTAT	4	112	1
GTTGTTTATCGGCGAGAAATTACTTAATAGAAC	4	162	1
CTTATTTCTCTTCGTAAAATTACT         	4	286	1
ATAAAAATCGGCCAAAAAATATCTTGTACTATT	5	47	0
AAAATAGTGAGTGAAAAAAATTCAATTTCAGTA	5	124	1
TGGAATGATGCTCGCAAAAATGCAGCGGACAAA	5	188	0
TCATTCCACCGCCAGAACAACTCAACTTCACTT	5	213	1
ACAGGAATCAGCCACTAAAATTCACGAATTAGC	5	256	1
          ****  ***** *
MAP Score: 6.19751

Motif 5
GCGTCATGATCGTGCTATTTCGCTACAGAATAAGGGAAAAT	1	73	0
AACCTTCATGCGGCGGATTTTTCCGCCGCCTTA        	3	13	1
          CGCGTTGTTTTTAGGCGATATATTTATTGAA	4	0	1
TGATCTCAATTCTGCATTTTGTCAGTAAAATGCAATAATTT	4	102	1
TATCAATAAATTAGTTGTTTATCGGCGAGAAATTACTTAAT	4	149	1
GAAAGTAATGTCAACGCTTTATGGACTGTTTTTTCCCTTTT	4	196	1
TGGACTGTTTTTTCCCTTTTTTTAGCTAAATCTGCTATCTC	4	217	1
GTAAATAGTACAAGATATTTTTTGGCCGATTTTTATGATGC	5	44	1
TTCCTCGTAGTTCATCCTTTGTCCGCTGCATTTTTGCGAGC	5	171	1
CCCGCTAATTCGTGAATTTTAGTGGCTGATTCCTGTTTATT	5	251	0
          *  *   *** *  ** *  *
MAP Score: 4.78161

Motif 6
GGATGGTAAAAATCTCATTTACACGCTAGTATC	1	142	1
TTATGTGACTAACTTCACTTACATCCACTTATT	4	259	1
TGCGTTTAATAATTTCAATATAAATTGTTGTTT	5	82	1
TGAGTGAAAAAAATTCAATTTCAGTATGAATGT	5	131	1
AGAACAACTCAACTTCACTTGCACAAATAAACA	5	226	1
          ** **** ** **
MAP Score: 2.79538

Motif 7
ACTTCCCGGTCACGCTAAGAATGA       	0	3	0
GGAAGTCGGTCACGCTACCTCTTCTGAAGCC	0	28	1
AAGGACGATGCACGCTATGCCTCCCTGATGA	1	20	1
ATCTCATTTACACGCTAGTATCGGCATAACC	1	153	1
AACCACTAAACACTCTAGCCTCTGCACCTGG	1	180	1
GCTGCTGTAGCCCGCTAATTCGTGAATTTTA	5	271	0
          ******* ***
MAP Score: 0.661333

Motif 8
CATTCTGTTTAACGAGACTGTTTAAACGGAAAAATCTTG      	0	85	1
TATGTGATGGATGTCACTTATTTATTTCAATAAATATATCGCCTA	4	21	0
ATATTTAATAAATTATTGCATTTTACTGACAAAATGCAGAATTGA	4	107	0
AATATCAATAAATTAGTTGTTTATCGGCGAGAAATTACTTAATAG	4	147	1
TCACATAAAGAGATAGCAGATTTAGCTAAAAAAAGGGAAAAAACA	4	222	0
CTTCACTTACATCCACTTATTTCTCTTCGTAAAATTACT      	4	271	1
AATAATTTCAATATAAATTGTTGTTTTTTAAAAATAAAATAGTGA	5	89	1
TGTTTTTTAAAAATAAAATAGTGAGTGAAAAAAATTCAATTTCAG	5	110	1
CACCGCCAGAACAACTCAACTTCACTTGCACAAATAAACAGGAAT	5	219	1
          *   *     ** *     * ****
MAP Score: 0.440792