AlignACE 3.0 10/20/99
AlignACE2 -i EC_operons072_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	943442618
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	talB	278	transaldolase B
#1	mog	114	required for the efficient incorporation of molybdate into molybdoproteins
#2	moaA	300	molybdopterin biosynthesis, protein A
#3	moaB	21	molybdopterin biosynthesis, protein B
#4	b1497	36	putative enzyme
#5	b1498	300	putative sulfatase
#6	yifB	300	putative 2-component regulator

Motif 1
TCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTA	0	19	1
TATAAAAATGGCGGGCGATATCAACGCAGTGTCAGAAATC	0	128	1
AACAGTCTCGCCTGGCGATAACCGTCTTGTCGGCGGTTGC	0	171	1
GATGATATCACGACGCAACGTCAGCGCAACCGCCGACAAG	0	196	0
CGTGATATCATCAGGGCAGACCGGTTACATCCCCCTAACA	0	224	1
TTCTTAGCGTGACCGGGAAGTCGGTCACGCTACCTCTTCT	1	13	1
AAAGGACGATGCACGCTATGCCTCCCTGATGATGTATATC	2	19	1
TACACGCTAGTATCGGCATAACCACTAAACACTCTAGCCT	2	161	1
CGAGCATTGTCACGGCCAAAGCACCGTATCAGTTGACCCA	2	208	0
TCCAGATACGGGAGGCGAAGTCATTTCTTCCTTCGCCCTG	2	261	0
    TAAGGCGGCGGAAAAATCCGCCGCATGAAGGTTTAG	4	10	0
GAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAA	6	144	0
AGCATCATTCCACCGCCAGAACAACTCAACTTCACTTGCA	6	209	1
TCACGAATTAGCGGGCTACAGCAGCGATATCTT       	6	277	1
          *  *** * * *  **   *
MAP Score: 12.6925

Motif 2
GTAACGTTTACACAGGAAAGTCATCGCGACCGGCAATAAG	0	20	0
TATAAAAATGGCGGGCGATATCAACGCAGTGTCAGAAATC	0	128	1
GATGATATCACGACGCAACGTCAGCGCAACCGCCGACAAG	0	196	0
TGACCGGGAAGTCGGTCACGCTACCTCTTCTGAAGCCTGT	1	22	1
CGAGCATTGTCACGGCCAAAGCACCGTATCAGTTGACCCA	2	208	0
CCAGGGCGAAGGAAGAAATGACTTCGCCTCCCGTATCTGG	2	260	1
TAATAGAACAGAAAGTAATGTCAACGCTTTATGGACTGTT	5	186	1
AGCATCATTCCACCGCCAGAACAACTCAACTTCACTTGCA	6	209	1
TCACGAATTAGCGGGCTACAGCAGCGATATCTT       	6	277	1
          *   *  * * ** ***  *
MAP Score: 10.2543

Motif 3
 GCATATCCCTCTTATTGCCGGTCGCGATGACT	0	9	1
GACACTGCGTTGATATCGCCCGCCATTTTTATA	0	128	0
GCGATAACCGTCTTGTCGGCGGTTGCGCTGACG	0	185	1
CTTGTTAGGGGGATGTAACCGGTCTGCCCTGAT	0	233	0
        CAAGATTTTTCCGTTTAAACAGTCT	1	99	0
GAGTGTTTAGTGGTTATGCCGATACTAGCGTGT	2	162	0
ACTGATACGGTGCTTTGGCCGTGACAATGCTCG	2	215	1
  CTGATCTCTCCTTTTGACGTT          	3	0	0
TTCATGCGGCGGATTTTTCCGCCGCCTTA    	4	17	1
    CGCGTTGTTTTTAGGCGATATATTTATTG	5	6	1
TAAATTAGTTGTTTATCGGCGAGAAATTACTTA	5	155	1
CTTTATGGACTGTTTTTTCCCTTTTTTTAGCTA	5	212	1
GTACAAGATATTTTTTGGCCGATTTTTATGATG	6	51	1
TCGTAGTTCATCCTTTGTCCGCTGCATTTTTGC	6	175	1
TTTGTCCGCTGCATTTTTGCGAGCATCATTCCA	6	188	1
AAGATATCGCTGCTGTAGCCCGCTAATTCGTGA	6	277	0
          ** *** **** *
MAP Score: 6.35279

Motif 4
      CGCGTTGTTTTTAGGCGATATATTTATTGAAATA	5	4	1
AATAAATTAGTTGTTTATCGGCGAGAAATTACTTAATAGA	5	153	1
TTACATCCACTTATTTCTCTTCGTAAAATTACT       	5	277	1
TGAAATTGAATTTTTTTCACTCACTATTTTATTTTTAAAA	6	114	0
TGTTGCATGATTATTTATGATCTCAATTCTGCATTTTGTC	5	85	1
TCGTAGTTCATCCTTTGTCCGCTGCATTTTTGCGAGCATC	6	175	1
TGTAAATGAGATTTTTACCATCCACACTTTCGCTATGTAA	2	125	0
TGATTCCTGTTTATTTGTGCAAGTGAAGTTGAGTTGTTCT	6	226	0
ATGCAATAATTTATTAAATATCAATAAATTAGTTGTTTAT	5	131	1
CACTATTTTATTTTTAAAAAACAACAATTTATATTGAAAT	6	93	0
ATAGTACAAGATATTTTTTGGCCGATTTTTATGATGCGTT	6	48	1
  GATAGTATTTCTCTTTAAACAGCTTGTTAGGGGGATGT	0	250	0
          ** *** *   *   *  **
MAP Score: 6.02274

Motif 5
AGACTGTTTAAACGGAAAAATCTTG     	1	99	1
GCTACAGAATAAGGGAAAATGGCGGTTTTA	2	63	0
    TAAGGCGGCGGAAAAATCCGCCGCAT	4	20	0
TAGCTAAAAAAAGGGAAAAAACAGTCCATA	5	215	0
ATAAAATAGTGAGTGAAAAAAATTCAATTT	6	122	1
AACTACGAGGAAGGGAACAACATTCATACT	6	153	0
GCAAAAATGCAGCGGACAAAGGATGAACTA	6	178	0
          **********
MAP Score: 4.65027

Motif 6
CGATAACCGTCTTGTCGGCGGTTGCGCTGAC	0	186	1
TGCATCGTCCTTTAGAGGTAGA         	2	1	0
GGCTAGAGTGTTTAGTGGTTATGCCGATACT	2	169	0
GATACGGTGCTTTGGCCGTGACAATGCTCGT	2	218	1
CTTCCTTCGCCCTGGTGGCAATCTTTACGAG	2	244	0
  CTAAACCTTCATGCGGCGGATTTTTCCGC	4	8	1
ATGCGGCGGATTTTTCCGCCGCCTTA     	4	20	1
   CGCGTTGTTTTTAGGCGATATATTTATT	5	7	1
AAATTAGTTGTTTATCGGCGAGAAATTACTT	5	156	1
GTACAAGATATTTTTTGGCCGATTTTTATGA	6	51	1
TAGTTCATCCTTTGTCCGCTGCATTTTTGCG	6	178	1
GTTGAGTTGTTCTGGCGGTGGAATGATGCTC	6	208	0
ATTCGTGAATTTTAGTGGCTGATTCCTGTTT	6	254	0
          ********* *
MAP Score: 4.00405

Motif 7
ACAGGAAAGTCATCGCGACCGGCAATAAGAGGGATATGC 	0	9	0
GACGCAACGTCAGCGCAACCGCCGACAAGACGGTTATCGC	0	185	0
   TCATTCTTAGCGTGACCGGGAAGTCGGTCACGCTACC	1	7	1
CAGAATGATACACTGCGAAGGGAGTGACAGACAGGCTTCA	1	52	0
TCATTCTGTTTAACGAGACTGTTTAAACGGAAAAATCTTG	1	84	1
GCTATTTCGCTACAGAATAAGGGAAAATGGCGGTTTTACT	2	61	0
TACATGATTACATAGCGAAAGTGTGGATGGTAAAAATCTC	2	118	1
AGATTGCCACCAGGGCGAAGGAAGAAATGACTTCGCCTCC	2	251	1
GTTAGTCACATAAAGAGATAGCAGATTTAGCTAAAAAAAG	5	232	0
          **  * **  *   * * **
MAP Score: 3.83309

Motif 8
GTACTTGATAACTTCTGCGTAGCATACATGAGGTT	0	90	1
GGTCACGCTACCTCTTCTGAAGCCTGTCTGTCACT	1	35	1
GCCATTTTCCCTTATTCTGTAGCGAAATAGCACGA	2	70	1
ACCTGGGTCAACTGATACGGTGCTTTGGCCGTGAC	2	205	1
CATGCGGCGGATTTTTCCGCCGCCTTA        	4	19	1
TTTTTGGCCGATTTTTATGATGCGTTTAATAATTT	6	62	1
GTAGTTCATCCTTTGTCCGCTGCATTTTTGCGAGC	6	177	1
          ***  ****  ** *
MAP Score: 2.9083

Motif 9
TACACAGGAAAGTCATCGCGACCGGCAATA	0	22	0
GACACTGCGTTGATATCGCCCGCCATTTTT	0	131	0
TTCGGATTTCTGACACTGCGTTGATATCGC	0	142	0
GCGGTTGCGCTGACGTTGCGTCGTGATATC	0	203	1
GGCAGACCGGTTACATCCCCCTAACAAGCT	0	238	1
        TCATTCTTAGCGTGACCGGGAA	1	2	1
AAACAGAATGATACACTGCGAAGGGAGTGA	1	65	0
TTTTCCCTTATTCTGTAGCGAAATAGCACG	2	74	1
ATATACATGATTACATAGCGAAAGTGTGGA	2	115	1
ACTGATACGGTGCTTTGGCCGTGACAATGC	2	215	1
AAGTCATTTCTTCCTTCGCCCTGGTGGCAA	2	254	0
AAGGAAGAAATGACTTCGCCTCCCGTATCT	2	268	1
CGGCGGATTTTTCCGCCGCCTTA       	4	23	1
ATTTCAATAAATATATCGCCTAAAAACAAC	5	13	0
GTACAAGATATTTTTTGGCCGATTTTTATG	6	51	1
TGGCCGATTTTTATGATGCGTTTAATAATT	6	66	1
GCGAGCATCATTCCACCGCCAGAACAACTC	6	206	1
AAGATATCGCTGCTGTAGCCCGCTAATTCG	6	280	0
          **********
MAP Score: 2.85914

Motif 10
CCGACTTCCCGGTCACGCTAAGAATGA   	1	7	0
CCGGGAAGTCGGTCACGCTACCTCTTCTGA	1	25	1
CTAAAGGACGATGCACGCTATGCCTCCCTG	2	17	1
AAAATCTCATTTACACGCTAGTATCGGCAT	2	150	1
TTTAAGAAGTATATACGCTACGAGGTACTT	0	66	1
CCGTTTAAACAGTCTCGTTAAACAGAATGA	1	84	0
CGGTGGAATGATGCTCGCAAAAATGCAGCG	6	194	0
ACTTTCCTGTGTAAACGTTACCAATTGTTT	0	39	1
GGCCGTGACAATGCTCGTAAAGATTGCCAC	2	231	1
          **********
MAP Score: 0.58352