AlignACE 3.0 10/20/99 AlignACE2 -i EC_profile017_100.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 943438962 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 b0024 102 orf, hypothetical protein #1 ileS 42 isoleucine tRNA synthetase #2 lpxC 100 UDP-3-O-acyl N-acetylglucosamine deacetylase; lipid A biosynthesis #3 hlpA 121 histone-like protein, located in outer membrane or nucleoid #4 fabZ 104 (3R)-hydroxymyristol acyl carrier protein dehydratase #5 ybgC 149 orf, hypothetical protein #6 tolB 132 periplasmic protein involved in the tonb-independent uptake of group A colicins #7 pal 34 peptidoglycan-associated lipoprotein #8 ycaI 129 orf, hypothetical protein #9 msbA 36 ATP-binding transport protein; multicopy suppressor of htrB #10 ycaQ 36 orf, hypothetical protein #11 ycaR 51 orf, hypothetical protein #12 acpP 210 acyl carrier protein #13 ymfC 201 orf, hypothetical protein #14 hemA 213 enzyme in alternate path of synthesis of 5-aminolevulinate #15 prfA 41 peptide chain release factor RF-1 #16 kdsA 35 2-dehydro-3-deoxyphosphooctulonate aldolase #17 b1408 164 probable enzyme #18 xseA 161 exonuclease VII, large subunit #19 gutM 104 glucitol operon activator #20 srlR 66 regulator for gut (srl), glucitol operon #21 gutQ 31 orf, hypothetical protein #22 b3007 103 orf, hypothetical protein #23 glyQ 300 glycine tRNA synthetase, alpha subunit #24 kdtA 300 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase) Motif 1 ATTCTCGGTTCCGTATTTCGGTTTGATTACATAACAGGC 1 9 0 CATTCGGCGGGCCAGTTTAGCACAAAGAGCCTCGAAACCC 2 26 0 CGTTCCATCTTTTGTTCGCCAAACTTTACGGCCT 4 4 1 CATATCTCCCTTATCTGGACCGATGGCCCACGATAAT 6 105 0 TCAAAAAACCAGCATTTGTTGAAATAGCCGCATATT 9 8 0 CCGCGATTTGCACAAAATGCTCATGTTGCG 12 0 1 AAAATGATTTGCGTTATTGGGGGGTAAGGCCTCAAAATAA 12 74 1 TGAAAGATGCGCGTTATTAGGCTATAATGCGGCAATTCAT 13 155 1 AAAGAGAGCGCCCCCTTTTGGAGTAATTGCCGAAAGCCGT 14 112 0 ATTGCATCTACCCCTTTTTGCAAAAAATGCTTGCTATCCC 18 72 1 CATTTTGAAACCTAAATCAGGTAATCACGCCC 20 44 1 ATTACTTTTCCCGTTTTTGACTTAAATAGCTTCAGTTTGG 24 211 0 ** *** ** * ** MAP Score: 13.2129 Motif 2 TCTTACGATTGCGGCAGGCCGTGTTATTATTG 4 51 1 ACGTAAAATCGTGGTAAGACCTGCCGGGATTT 12 113 1 AGGCTATAATGCGGCAATTCATAATCTCTGAA 13 173 1 TGGAGTAATTGCCGAAAGCCGTTAGATTCTGG 14 102 0 GTATAATGCCGCGGCAATATTTATTAACCACT 18 28 0 TCAACAGCGGAGATCCATTAAGGATCTC 19 6 1 TAATGTAGTGGCGGAAGTCCTGTATGCCTGAT 19 72 0 ACTACTGAACGCGGGACGTCAGACGTTA 21 13 1 CAAGGATCAGGCGGCAAAACGTTATAACACCG 23 47 1 TATGAAATGCGCGGTTATACCTTCCGTAAAGA 23 126 1 TTCTTTTGACGCGGATGGCCATTTTTTGCATC 23 170 1 ATCTTTCCATGCGTTAAGCCCTGCTTTTTCCC 23 199 1 CTTCCATCCAGCGGGTATACTGATCCCTTCCT 23 247 1 TGAAGATGTAGCGGCAGATCAGACCAAACTGA 24 188 1 **** ***** * MAP Score: 9.92169 Motif 3 ACAATTCAAAGGCCGAGGAATATGCCCTTT 0 39 1 ACTATACATTCGGCGGGCCAGTTTAGCACA 2 42 0 AATATAAGATCGCCGGGCCACGCAAAGAAC 3 62 1 GAACTGCACCCTCCGGTGCAAATGGGATGG 3 88 1 AAAAATTATGGGCCGCTCCAGGCCCATAAA 5 26 1 GTTCAAAACTCTGCGAGGCAGCTTCCAGTT 8 77 0 TTACGCCGCGGCAGCGTTCGATT 10 3 1 ACCACGCAGACTGCGCGCAACATGAGCATT 12 25 0 TAATAAATATTGCCGCGGCATTATACAGAG 18 34 1 GTTATAACACCGGCGAGCAAAAAATCGACG 23 67 1 ********** MAP Score: 9.91223 Motif 4 CCACGCAAAGAACTGCACCCTCCGGTGCAAATGGGATGGT 3 79 1 CCAAACCTCAATCGCGCGCGTATAGTAGCAGCGTTTAAAA 5 86 1 TGCATTCATAACCCGATCCATCTGGAGGAACT 11 29 1 GACTGCGCGCAACATGAGCATTTTGTGCAAATCGCGG 12 7 0 TCACCTCTCCTTCGAGCGCTACTGGTTTGCT 13 1 1 ACGTTGCATATGCGTTTGCGTCCTGCGATACGGATGCTTT 13 52 1 AGCGGACGGTAACGCTAGCATTAAGGGTTATAACTGCAAC 14 34 0 AATAAAAGAGAGCGCCCCCTTTTGGAGTAATTGCCGAAAG 14 116 0 TCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGA 14 147 1 AACCGATTGCATCTACCCCTTTTTGCAAAAAATGCTTGCT 18 67 1 AGTCGATAGTAACCCGCCCTTCGGGGATAGCAAGCATTTT 18 95 0 AACTTTTCCTTAATGTAGTGGCGGAAGTCC 19 84 0 CATGAATATTCGCGGGCGCATCCTGAAGAATTGGCATAAA 22 51 1 * * *** ** * * * MAP Score: 8.62164 Motif 5 GAATGTAGTGGTAGTGTAGCGATGACTTTAGGC 3 25 1 GTGTAGCGATGACTTTAGGCGATCAATATAAGA 3 38 1 AGTTCTTTGCGTGGCCCGGCGATCTTATATTGA 3 60 0 ATAATAACACGGCCTGCCGCAATCGTAAGAATG 4 48 0 AACTTTTGTTGCATTACCGGGATGTAAA 5 131 1 ACTGGAAGCTGCCTCGCAGAGTTTTGAACAGTT 8 78 1 ATCGTGGTAAGACCTGCCGGGATTTAGTTGCAA 12 120 1 CATATGCGTTTGCGTCCTGCGATACGGATGCTT 13 58 1 CAGAGATTATGAATTGCCGCATTATAGCCTAAT 13 170 0 AGAATCTAACGGCTTTCGGCAATTACTCCAAAA 14 104 1 TTAATGAAACGGCGTGTTGCGATATCTCCGTCA 17 100 1 ATAGTAACCCGCCCTTCGGGGATAGCAAGCATT 18 97 0 GCATTCTATAGTCTCACGGAGATCCTTAATGGA 19 23 0 TAACGTCTGACGTCCCGCGTTCAGTAGTGCT 21 10 0 CATTCGGGTCGGATTGCTGCGAAAGAAATGATA 24 19 0 ATCTACATAGGCCGTACTGACATTATCGAAATG 24 106 0 * *** * ***** MAP Score: 8.37735 Motif 6 AATCCATTGACAAAAGAAGGCTAAAAGGGC 0 62 0 TGGATTTGTGCAAATAAGCGCCGTTA 0 86 1 GTTTGGCGAACAAAAGATGGAACG 4 4 0 GCCATCGGTCCAGATAAGGGAGATATG 6 115 1 GCTATTTCAACAAATGCTGGTTTTTTGA 9 18 1 AAATCATTAACAAAAAATTGCTCTAAAGCA 13 86 0 GCAATTACTCCAAAAGGGGGCGCTCTCTTT 14 122 1 GCATTTTTTGCAAAAAGGGGTAGATGCAAT 18 72 0 CCCCTTTTTGCAAAAAATGCTTGCTATCCC 18 82 1 CACCGGCGAGCAAAAAATCGACGTCACCGC 23 74 1 TGGAAAGATGCAAAAAATGGCCATCCGCGT 23 178 0 CTATTTAAGTCAAAAACGGGAAAAGTAATG 24 222 1 ********** MAP Score: 7.97992 Motif 7 ATTTGTGCAAATAAGCGCCGTTA 0 89 1 TGTGCTAAACTGGCCCGCCGAATGTATAGT 2 42 1 GTTCTTTGCGTGGCCCGGCGATCTTATATT 3 62 0 AATAATAACACGGCCTGCCGCAATCGTAAG 4 52 0 CTTTAAAAAATTATGGGCCGCTCCAGGCCC 5 21 1 TGCCTGATGTTGACCGTCCGAACAGTCAAC 6 17 0 AATCGTGGTAAGACCTGCCGGGATTTAGTT 12 119 1 TACTACCCTATTGTTTGCCGTCATGAAAGA 13 132 1 TCAGAGATTATGAATTGCCGCATTATAGCC 13 174 0 AATGCTAGCGTTACCGTCCGCTATCGTCTA 14 52 1 AGATCCTTAATGGATCTCCGCTGTTGA 19 7 0 AGATCCATTAAGGATCTCCGTGAGACTATA 19 20 1 TCAGGCATACAGGACTTCCGCCACTACATT 19 73 1 TTGATCCTCTGCGTTCGTTGA 23 1 1 CGTCGATTTTTTGCTCGCCGGTGTTATAAC 23 67 0 ATGCGCGGTTATACCTTCCGTAAAGAGCAG 23 132 1 ATGCAAAAAATGGCCATCCGCGTCAAAAGA 23 171 0 AGGGATCAGTATACCCGCTGGATGGAAGAT 23 245 0 CAGTTTGGTCTGATCTGCCGCTACATCTTC 24 189 0 ********** MAP Score: 7.85572 Motif 8 GTGTTCTCCACAAAGGAATGTAGTGGTA 3 6 1 CAACATTTTATACACTACGAAAACCATCGCGA 12 159 1 CACTACGAAAACCATCGCGAAAGCGAGTTTTG 12 171 1 TCCACAACGTAATGTTTTTTAA 17 0 1 GAATTGATGCACCATAGCGCAAACCGAATTAT 17 136 1 CGCGGCATTATACAGAGCGTAACCGATTGCAT 18 47 1 CTTCCGCCACTACATTAAGGAAAAGTT 19 87 1 GCAAGTAACATTCACAACGAAA 20 0 0 ATGGAAGATATACAGTACGAAACGGGAAAAAG 23 222 0 TCCACACGTATCCAGCACGAAATAAT 23 284 1 ***** *** ** MAP Score: 7.42531 Motif 9 TAACGGCGCTTATTTGCACAAATCCATTGACAAAA 0 77 0 CAACATCAGGCACCGGTTGCCACGGGGTTCTGGTAGTTTT 6 35 1 CCGCGATTTGCACAAAATGCTCATGTTGCG 12 0 1 CCTTCGAGCGCTACTGGTTTGCTCGTCTGCCACCACGTTG 13 18 1 TAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTT 14 57 1 AAAGAGAGCGCCCCCTTTTGGAGTAATTGCCGAAAGCCGT 14 112 0 TTTAATGAAACGGCGTGTTGCGATATCTCCGTCAGGGGAA 17 99 1 ATTGCATCTACCCCTTTTTGCAAAAAATGCTTGCTATCCC 18 72 1 CGAAAATTTTCTGCTTTATGCCAATTCTTCAGGATGCGCC 22 65 0 AAATCGACGTCACCGCCTTCGAACAGTTCCAGGGAAGCTA 23 88 1 GAAGGTATAACCGCGCATTTCATAGCTTCCCTGGAACTGT 23 110 0 AACAGACAAACTGCTCTTTACGGAAGGTATAACCGCGCAT 23 132 0 ATCAGTATACCCGCTGGATGGAAGATATACAGTACGAAAC 23 231 0 GGTAAAGCCACAGCTAAATACATAGAATCCCCAGCACATC 24 251 1 * *** ** * * * * MAP Score: 6.69209 Motif 10 ACGGCGCTTATTTGCACAAATCCATTGACA 0 80 0 CCGCGATTTGCACAAAATGCTCATGT 12 6 1 GCGGGCCAGTTTAGCACAAAGAGCCTCGAA 2 30 0 TCTACCCCTTTTTGCAAAAAATGCTTGCTA 18 78 1 GCCATTTGCGAAAATTTTCTGCTT 22 89 0 CGCAAATCATTTTGCACTAATTATTACTCA 12 57 0 TTGATGCACCATAGCGCAAACCGAATTATC 17 139 1 TTACAAATCATTAACAAAAAATTGCTCTAA 13 90 0 TTACCCCCCAATAACGCAAATCATTTTGCA 12 71 0 GTTTTTTACTCAAACTTGAACGAG 8 4 1 GAATGATTTTTATACACAAAATATACTTTA 24 47 1 ********** MAP Score: 5.72528 Motif 11 TAACGGCGCTTATTTGCACAAATCCAT 0 85 0 CCGGAGGGTGCAGTTCTTTGCGTGGCCCGGC 3 73 0 CCGCGATTTGCACAAAATGCT 12 0 1 CAATACTACCCTATTGTTTGCCGTCATGAAA 13 129 1 TTTAATGAAACGGCGTGTTGCGATATCTCCG 17 99 1 ATTGCATCTACCCCTTTTTGCAAAAAATGCT 18 72 1 CGAAAATTTTCTGCTTTATGCCAATTCTTCA 22 74 0 GCGGTGACGTCGATTTTTTGCTCGCCGGTGT 23 73 0 AACAGACAAACTGCTCTTTACGGAAGGTATA 23 141 0 ACGCGGATGGCCATTTTTTGCATCTTTCCAT 23 178 1 GCGTTAAGCCCTGCTTTTTCCCGTTTCGTAC 23 209 1 ATCCATAAGTCAGCTATTTACT 24 288 1 * ********* MAP Score: 4.86183 Motif 12 GTTATGTAATCAAACCGAAATACGGAACCGA 1 14 1 AAAGAGCCTCGAAACCCAAATTCCAGTCAAT 2 12 0 CAAAATATAAGAAACGACAATAATAACACGG 4 69 0 CCCTCATTCCCAAACCTCAATCGCGCGCGTA 5 77 1 AGAATGTTAACAAACTAAAATACACAAAACT 6 69 0 TCGCAGGACGCAAACGCATATGCAACGTGGT 13 49 0 CACCATAGCGCAAACCGAATTATCAAGGA 17 145 1 TTATCATTTTGAAACCTAAATCAGGTAATCA 20 40 1 ****** **** MAP Score: 4.53613 Motif 13 CTTGCTATCCCCGAAGGGCGGGTTACTATC 18 101 1 GGAGTAATTGCCGAAAGCCGTTAGATTCTG 14 103 0 CTGGAACTGTTCGAAGGCGGTGACGTCGAT 23 90 0 CTTACGATTGCGGCAGGCCGTGTTATTATT 4 52 1 TATGGACAATTCAAAGGCCGAGGAATATGC 0 34 1 ACTCCATCAATCGAACGCTGCCGCGGCGTA 10 11 0 TGTGCTAAACTGGCCCGCCGAATGTATAGT 2 42 1 GTTCTTTGCGTGGCCCGGCGATCTTATATT 3 62 0 GAATTTTTAATGAAACGGCGTGTTGCGATA 17 94 1 AAAAAAGCACCCGACAGGTGCTTTTCTCTC 8 31 0 CCCATTTGCACCGGAGGGTGCAGTTCTTTG 3 84 0 GGCAATTACTCCAAAAGGGGGCGCTCTCTT 14 121 1 AAGAATTTAACGAAAGGGTGAAAACTGTTC 8 103 0 AGCATCCGTATCGCAGGACGCAAACGCATA 13 60 0 AGCACTACTGAACGCGGGACGTCAGAC 21 7 1 TCAACAGCGGAGATCCATTA 19 0 1 CTCCCTTATCTGGACCGATGGCCCACGATA 6 107 0 GCTTAACGCATGGAAAGATGCAAAAAATGG 23 188 0 ********** MAP Score: 4.26626 Motif 14 TTTCGAGGCTCTTTGTGCTAAACTGGCCCGCC 2 29 1 AGTTTGTTAACATTCTGCTAAATTATCGTGGG 6 84 1 CCGCGATTTGCACAAAATGCTCATG 12 3 1 TAACGCAAATCATTTTGCACTAATTATTACTC 12 58 0 TATGCGTTTGCGTCCTGCGATACGGATGCTTT 13 60 1 TTGCATCATACAGGATGCGTAAGATCAATAAA 14 150 0 AATGAAACGGCGTGTTGCGATATCTCCGTCAG 17 102 1 CTTGATAATTCGGTTTGCGCTATGGTGCATCA 17 140 0 GCATCTACCCCTTTTTGCAAAAAATGCTTGCT 18 75 1 CTATAGAATGCCTGATGCGCTACGCTCATCAG 19 45 1 GCCATTTGCGAAAATTTTCTGCT 22 90 0 TTCGGGTCGGATTGCTGCGAAAGAAATGATAC 24 18 0 * ** ******* MAP Score: 3.6301 Motif 15 TGGACAATTCAAAGGCCGAGGAATATGCCCTTTTA 0 36 1 GGATAGGTAATTTGGCGAGATAATACG 2 83 1 CCCAAACCTCAATCGCGCGCGTATAGTAGCAGCGT 5 85 1 TCGTGGTAAGACCTGCCGGGATTTAGTTGCAAATT 12 121 1 ATGATTTGTAATTGGCTTGTCAATACTACCCTATT 13 109 1 CCGTCATGAAAGATGCGCGTTATTAGGCTATAATG 13 149 1 AAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCG 14 87 1 CGCTCTGTATAATGCCGCGGCAATATTTATTAACC 18 31 0 GCTATCCCCGAAGGGCGGGTTACTATCGACTGAAT 18 104 1 TCCATTAAGGATCTCCGTGAGACTATAGAATGCCT 19 23 1 ATTCTTCAGGATGCGCCCGCGAATATTCATGCTAG 22 47 0 ACGTTATAACACCGGCGAGCAAAAAATCGACGTCA 23 65 1 GGAAGCTATGAAATGCGCGGTTATACCTTCCGTAA 23 120 1 * **** * **** MAP Score: 3.46034 Motif 16 AAAAGGGCATATTCCTCGGCCTTTGAATTGTCCA 0 36 0 GATTTGTGCAAATAAGCGCCGTTA 0 88 1 GCGATCTTATATTGATCGCCTAAAGTCATCGCTA 3 41 0 ATTTATGGGCCTGGAGCGGCCCATAATTTTTTAA 5 23 0 CCAAACCTCAATCGCGCGCGTATAGTAGCAGCGT 5 86 1 AATATGCGGCTATTTCAACAAATG 9 0 1 CAATCGAACGCTGCCGCGGCGTAA 10 0 0 GTTCCTCCAGATGGATCGGGTTATGAATGCATAA 11 26 0 CAAAATGCTCATGTTGCGCGCAGTCTGCGTGGTT 12 22 1 ATTTTACGTTATTTTGAGGCCTTACCCCCCAATA 12 88 0 GCCGTCATGAAAGATGCGCGTTATTAGGCTATAA 13 148 1 TTATTAGGCTATAATGCGGCAATTCATAATCTCT 13 168 1 TGAATTTTTAATGAAACGGCGTGTTGCGATATCT 17 93 1 GCTCTGTATAATGCCGCGGCAATATTTATTAACC 18 31 0 TTATGCAAGGATCAGGCGGCAAAACGTTATAACA 23 42 1 TATATCTTCCATCCAGCGGGTATACTGATCCCTT 23 242 1 AAAAATGAAGATGTAGCGGCAGATCAGACCAAAC 24 183 1 *** ***** ** MAP Score: 3.14095