AlignACE 3.0 10/20/99 AlignACE2 -i EC_profile066_100.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 943440910 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 queA 92 synthesis of queuine in tRNA; probably S-adenosylmethionine:tRNA ribosyltransferase-isomerase #1 tgt 55 tRNA-guanine transglycosylase #2 yajC 22 orf, hypothetical protein #3 secD 27 protein secretion; membrane protein, part of the channel #4 sohB 219 putative protease #5 dapF 300 diaminopimelate epimerase #6 murB 300 UDP-N-acetylenolpyruvoylglucosamine reductase #7 serB 105 3-phosphoserine phosphatase #8 sms 48 probable ATP-dependent protease Motif 1 CCTCTTATTTTAGTCTGAGTCAGTGTC 0 75 1 CTCAACGACGTTGTCTGTCGCGCTGCCAGTGTACT 4 18 1 GCATTTCAATCAGCCTGGGGCGATAACACCGCAAA 4 88 1 CTTTTACGTCTTCTCCTGCGATGATAGAAAGCA 5 8 1 TTACTCTCTTCAGCCTGACGGGCTGCGGTCTGAAA 5 107 1 TCTACCGGTTTGGTCGGCGGCGGTGCGTTTTTATC 5 166 0 CGATCGTTTTTATCCGGCACCGTGGATTGCGTTTG 5 205 0 GGATGGACCATCGCCAGTGGCGCGATCGTTTTTAT 5 227 0 TAGGACAAATCCGCCGGGAGCGGATTTGAACGTTG 6 87 1 TGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGAC 6 120 1 AGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCG 6 185 1 AGCTGCTTTCCTGATGCAAAAACGAGGCTAG 6 279 0 AGACTTAATGTTGCCAGAAGCAATGGATACAAGGT 7 31 1 GGATACAAGGTAGCCTCATGCGTTATTTTCCCTGC 7 55 1 TCCTGTAAAATCGTTCGAAGCAGGGAAAATAACGC 7 74 0 TAATGCTGTGCCGCCCGCAGGATGGCGGGCGAGCA 8 11 0 * *** * *** ** MAP Score: 25.263 Motif 2 GGCGGGCGTCCTGCCCGCCACCCTCCGGGCC 6 131 0 TAATGCTGTGCCGCCCGCAGGATGGCGGGCG 8 15 0 GCAGGGAGAGCGCCCCGGCACTAGACTACCC 0 43 1 TGCGAAGCAACGGCCCGGAGGGTGGCGGGCA 6 120 1 TTACTCTCTTCAGCCTGACGGGCTGCGGTCT 5 107 1 CAGATAAAAACGCACCGCCGCCGACCAAACC 5 164 1 AGTACACTGGCAGCGCGACAGACAACGTCGT 4 22 0 GTTCAAATCCGCTCCCGGCGGATTTGTCCTA 6 87 0 TTGCTCGCCCGCCATCCTGCGGGCG 8 4 1 GCGGACCTTTCAGACCGCAGCCCGTCAGGCT 5 118 0 CGGCACTAGACTACCCGCCTCTTATTTTAGT 0 58 1 ATCTACAAGCCATCCCCCCACAGATACGGTA 6 246 1 AGCAGAAGGCCATCCTGACGGATGGCCTTTT 6 185 1 GCATTTCAATCAGCCTGGGGCGATAACACCG 4 88 1 TTCCGCGGCGCTGGTTTAAAA 1 0 1 CCGGGGCGCTCTCCCTGCAACCTTTACCCCC 0 30 0 GGCGGGCAGGACGCCCGCCATAAACTGCCAG 6 143 1 CCGCCATAAACTGCCAGGCATCAAATTAAGC 6 157 1 GGATAAAAACGATCGCGCCACTGGCGATGGT 5 225 1 GTCCGCTCTATTTCCCGCCTGCAGATAAAAA 5 143 1 AATAACATCTCTGCGAGACGGCTTAACATGC 4 150 1 AGACTTAATGTTGCCAGAAGCAATGGATACA 7 31 1 * ********* MAP Score: 22.694 Motif 3 CCGGGGCGCTCTCCCTGCAACCTTTACCCCC 0 30 0 GGTAGTCTAGTGCCGGGGCGCTCTCCCTGCA 0 42 0 CGGCACTAGACTACCCGCCTCTTATTTTAGT 0 58 1 TTCCGCGGCGCTGGTTTAAAA 1 0 1 CGACGTTGTCTGTCGCGCTGCCAGTGTACTT 4 23 1 CTGATTGAAATGCCCTTCTGTTTCAGGCATA 4 70 0 CTCTTCAGCCTGACGGGCTGCGGTCTGAAAG 5 112 1 TCCGCTCTATTTCCCGCCTGCAGATAAAAAC 5 144 1 CAGATAAAAACGCACCGCCGCCGACCAAACC 5 164 1 TTCAAATCCGCTCCCGGCGGATTTGTCCTAC 6 86 0 GCCCGCCACCCTCCGGGCCGTTGCTTCGCAA 6 119 0 GCGGGCGTCCTGCCCGCCACCCTCCGGGCCG 6 130 0 TGGCAGTTTATGGCGGGCGTCCTGCCCGCCA 6 142 0 CTTAATTTGATGCCTGGCAGTTTATGGCGGG 6 156 0 TCCGTCAGGATGGCCTTCTGCTTAATTTGAT 6 176 0 CTACAAACTCTTCCTGTCGTCATATCTACAA 6 223 1 ATGCGTTATTTTCCCTGCTTCGAACGATTTT 7 72 1 TTGCTCGCCCGCCATCCTGCGGGCGG 8 5 1 GCCCGCCATCCTGCGGGCGGCACAGCATTAA 8 16 1 ******** ** MAP Score: 17.973 Motif 4 TGCGAAGCAACGGCCCGGAGGGTGGCGGGCAG 6 120 1 TAATGCTGTGCCGCCCGCAGGATGGCGGGCGA 8 14 0 CGTTTTAAACCAGCGCCGCGGAA 1 1 0 TTACTCTCTTCAGCCTGACGGGCTGCGGTCTG 5 107 1 TAGGACAAATCCGCCGGGAGCGGATTTGAACG 6 87 1 AATAACATCTCTGCGAGACGGCTTAACATGCC 4 150 1 GCCCGGAGGGTGGCGGGCAGGACGCCCGCCAT 6 132 1 GCGTTTTTATCTGCAGGCGGGAAATAGAGCGG 5 145 0 GCATTTCAATCAGCCTGGGGCGATAACACCGC 4 88 1 CGTTTTTATCCGGCACCGTGGATTGCGTTTGC 5 204 0 AGTACACTGGCAGCGCGACAGACAACGTCGTT 4 21 0 GTTTCTGTACCCGCGTGATTGGAGTAA 5 283 1 CCGGTTTGGTCGGCGGCGGTGCGTTTTTATCT 5 165 0 GTTGCAGGGAGAGCGCCCCGGCACTAGACTAC 0 40 1 ATAAAAACGATCGCGCCACTGGCGATGGTCCA 5 227 1 GCCCGCAGGATGGCGGGCGAGCAA 8 2 0 GGATACAAGGTAGCCTCATGCGTTATTTTCCC 7 55 1 AGCAGAAGGCCATCCTGACGGATGGCCTTTTT 6 185 1 AGACTTAATGTTGCCAGAAGCAATGGATACAA 7 31 1 * ****** *** MAP Score: 17.8671 Motif 5 GGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG 6 122 0 GCATTTCAATCAGCCTGGGGCGATAACACCGCAAAATGGA 4 88 1 TTACTCTCTTCAGCCTGACGGGCTGCGGTCTGAAAGGTCC 5 107 1 GTCTGTCGCGCTGCCAGTGTACTTTATGACTTTGGGGCTT 4 30 1 TTGCTCGCCCGCCATCCTGCGGGCGGCACAGCAT 8 4 1 TCATTATGGATTGCCTGTAAAGTTCATCGCTTTCTGCTTT 5 37 0 TCTACAAACTCTTCCTGTCGTCATATCTACAAGCCATCCC 6 222 1 GAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAA 6 189 1 CCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCA 6 157 1 AATAACATCTCTGCGAGACGGCTTAACATGCCTGTTGTAA 4 150 1 CCGGGGCGCTCTCCCTGCAACCTTTACCCCCTTTTGGATA 0 21 0 GCTCTATTTCCCGCCTGCAGATAAAAACGCACCGCCGCCG 5 147 1 AGACTTAATGTTGCCAGAAGCAATGGATACAAGGTAGCCT 7 31 1 GGATACAAGGTAGCCTCATGCGTTATTTTCCCTGCTTCGA 7 55 1 GGAGAGCGCCCCGGCACTAGACTACCCGCCTCTTATTTTA 0 47 1 TTCCGCGGCGCTGGTTTAAAACGTTGGACTGT 1 2 1 ACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGA 6 80 0 TTTTACGTCTTCTCCTGCGATGATAGAAAGCAGAAAGCGA 5 11 1 ***** * * * * * MAP Score: 15.4447 Motif 6 GTAAAGGTTGCAGGGAGAGCGCCCCGGCACTAG 0 34 1 TTCCGCGGCGCTGGTTTAAAACGTT 1 2 1 ACGACGTTGTCTGTCGCGCTGCCAGTGTACTTT 4 22 1 AATAACATCTCTGCGAGACGGCTTAACATGCCT 4 150 1 TTACTCTCTTCAGCCTGACGGGCTGCGGTCTGA 5 107 1 TGACGGGCTGCGGTCTGAAAGGTCCGCTCTATT 5 122 1 GATAAAAACGCACCGCCGCCGACCAAACCGGTA 5 166 1 ACGATCGCGCCACTGGCGATGGTCCATCCCAGG 5 233 1 GTTTCTGTACCCGCGTGATTGGAGTAA 5 283 1 AGGACAAATCCGCCGGGAGCGGATTTGAACGTT 6 88 1 TGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGG 6 120 1 CGGAGGGTGGCGGGCAGGACGCCCGCCATAAAC 6 135 1 AAAAGGCCATCCGTCAGGATGGCCTTCTGCTTA 6 183 0 TACCGTATCTGTGGGGGGATGGCTTGTAGATAT 6 244 0 TGCTGTGCCGCCCGCAGGATGGCGGGCGAGCAA 8 10 0 * *** *** *** MAP Score: 12.9124 Motif 7 CGGGTAGTCTAGTGCCGGGGCGCTCTCCCTGC 0 43 0 CTCAACGACGTTGTCTGTCGCGCTGCCAGTGT 4 18 1 GCATTTCAATCAGCCTGGGGCGATAACACCGC 4 88 1 AATAACATCTCTGCGAGACGGCTTAACATGCC 4 150 1 TTACTCTCTTCAGCCTGACGGGCTGCGGTCTG 5 107 1 TGCGTTTTTATCTGCAGGCGGGAAATAGAGCG 5 146 0 TAGGACAAATCCGCCGGGAGCGGATTTGAACG 6 87 1 TGCGAAGCAACGGCCCGGAGGGTGGCGGGCAG 6 120 1 CGGAGGGTGGCGGGCAGGACGCCCGCCATAAA 6 135 1 AGCAGAAGGCCATCCTGACGGATGGCCTTTTT 6 185 1 CGCCCGCAGGATGGCGGGCGAGCAA 8 3 0 CGCCCGCCATCCTGCGGGCGGCACAGCATTAA 8 15 1 * *** ****** MAP Score: 8.95018 Motif 8 GGGTAAAGGTTGCAGGGAGAGCGCCCCGGCACTAGACTACC 0 32 1 TCAACGACGTTGTCTGTCGCGCTGCCAGTGTACTTTATGAC 4 19 1 GAAACAGAAGGGCATTTCAATCAGCCTGGGGCGATAACACC 4 77 1 ATCTCTGCGAGACGGCTTAACATGCCTGTTGTAAACTGTGA 4 156 1 CATCGCTTTCTGCTTTCTATCATCGCAGGAGAAGACGTAAA 5 12 0 CACTGTATTACTTACTCTCTTCAGCCTGACGGGCTGCGGTC 5 96 1 CTGAAAGGTCCGCTCTATTTCCCGCCTGCAGATAAAAACGC 5 136 1 AAAAACGCACCGCCGCCGACCAAACCGGTAGAGACGCAAAC 5 169 1 GAGACGCAAACGCAATCCACGGTGCCGGATAAAAACGATCG 5 199 1 TCGCGCCACTGGCGATGGTCCATCCCAGGTGAATTACTAAA 5 237 1 GCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTA 6 87 0 ATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCA 6 110 1 GATGGCCTTCTGCTTAATTTGATGCCTGGCAGTTTATGGCG 6 158 0 TTTGTAGAAACGCAAAAAGGCCATCCGTCAGGATGGCCTTC 6 189 0 CTTTTTGCGTTTCTACAAACTCTTCCTGTCGTCATATCTAC 6 211 1 CTGTGCCGCCCGCAGGATGGCGGGCGAGCAA 8 0 0 *** ** *** * * MAP Score: 8.43067 Motif 9 TAGTCTAGTGCCGGGGCGCTCTCCCTGCAACCTTTAC 0 34 0 GCGCCCCGGCACTAGACTACCCGCCTCTTATTTTAGT 0 52 1 CAACGACGTTGTCTGTCGCGCTGCCAGTGTACTTTAT 4 20 1 AAACAGAAGGGCATTTCAATCAGCCTGGGGCGATAAC 4 78 1 CGCTGCAATAACATCTCTGCGAGACGGCTTAACATGC 4 144 1 TATTACTTACTCTCTTCAGCCTGACGGGCTGCGGTCT 5 101 1 TGAAAGGTCCGCTCTATTTCCCGCCTGCAGATAAAAA 5 137 1 GATTGCGTTTGCGTCTCTACCGGTTTGGTCGGCGGCG 5 179 0 AGACGCAAACGCAATCCACGGTGCCGGATAAAAACGA 5 200 1 TTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGG 6 111 1 AGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGG 6 138 1 AAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTT 6 179 1 CGTCATATCTACAAGCCATCCCCCCACAGATACGGTA 6 240 1 TTGCTCGCCCGCCATCCTGCGGGCGGCAC 8 2 1 ** * ** ***** MAP Score: 5.78987 Motif 10 GGAGAGCGCCCCGGCACTAGACTACCCGCCTCTTATTTTA 0 47 1 GTCTGTCGCGCTGCCAGTGTACTTTATGACTTTGGGGCTT 4 30 1 GCATTTCAATCAGCCTGGGGCGATAACACCGCAAAATGGA 4 88 1 TTACTCTCTTCAGCCTGACGGGCTGCGGTCTGAAAGGTCC 5 107 1 GCTCTATTTCCCGCCTGCAGATAAAAACGCACCGCCGCCG 5 147 1 TCGTTTTTATCCGGCACCGTGGATTGCGTTTGCGTCTCTA 5 197 0 TAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAG 6 87 1 TGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCG 6 120 1 AAACGCAAAAAGGCCATCCGTCAGGATGGCCTTCTGCTTA 6 183 0 TAATGCTGTGCCGCCCGCAGGATGGCGGGCGAGCAA 8 6 0 ***** * ** * * MAP Score: 4.65675 Motif 11 GGTTGCAGGGAGAGCGCCCCGGCACTAGACTA 0 39 1 TCAGACTAAAATAAGAGGCGGGTAGTCTAGTG 0 61 0 ACGTTTTAAACCAGCGCCGCGGAA 1 2 0 ACGACGTTGTCTGTCGCGCTGCCAGTGTACTT 4 22 1 AAGGGCATTTCAATCAGCCTGGGGCGATAACA 4 84 1 CAGCCTGGGGCGATAACACCGCAAAATGGATA 4 98 1 AATAACATCTCTGCGAGACGGCTTAACATGCC 4 150 1 TCTCTTCAGCCTGACGGGCTGCGGTCTGAAAG 5 111 1 CCTGCAGATAAAAACGCACCGCCGCCGACCAA 5 160 1 CAAACGCAATCCACGGTGCCGGATAAAAACGA 5 205 1 CGGATAAAAACGATCGCGCCACTGGCGATGGT 5 224 1 TTACTCCAATCACGCGGGTACAGAAACT 5 282 0 ACAGATAAAACGAAAGGCCCAGTCTTTCGACT 6 29 0 TGAGTAGGACAAATCCGCCGGGAGCGGATTTG 6 83 1 ACGTTGCGAAGCAACGGCCCGGAGGGTGGCGG 6 116 1 GGCCCGGAGGGTGGCGGGCAGGACGCCCGCCA 6 131 1 TATCTACAAGCCATCCCCCCACAGATACGGTA 6 245 1 TTGCTCGCCCGCCATCCTGCGGGCGGCACA 8 8 1 * * ******** MAP Score: 4.59906 Motif 12 CAACGACGTTGTCTGTCGCGCTGCCAGTGTACTT 4 20 1 TTATGCCTGAAACAGAAGGGCATTTCAATCAGCC 4 69 1 ACTCTCTTCAGCCTGACGGGCTGCGGTCTGAAAG 5 109 1 TGCAGATAAAAACGCACCGCCGCCGACCAAACCG 5 162 1 CGCCGACCAAACCGGTAGAGACGCAAACGCAATC 5 182 1 AGTAGGACAAATCCGCCGGGAGCGGATTTGAACG 6 85 1 GTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAG 6 118 1 CCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAA 6 133 1 GCCCGCCATAAACTGCCAGGCATCAAATTAAGCA 6 155 1 CATCAAATTAAGCAGAAGGCCATCCTGACGGATG 6 175 1 CTCGCCCGCCATCCTGCGGGCGGCACAGCATTAA 8 13 1 * * * ***** ** MAP Score: 3.81365 Motif 13 GTGCCGGGGCGCTCTCCCTGCAACCTTTACCCCCT 0 29 0 TTTTTCTCCACTACGTCAGAAAAAC 1 40 0 GGCTACTCCTCAACGACGTTGTCTG 4 0 1 AAAGTACACTGGCAGCGCGACAGACAACGTCGTTG 4 20 0 ATTTTGCGGTGTTATCGCCCCAGGCTGATTGAAAT 4 90 0 ATCTCTGCGAGACGGCTTAACATGCCTGTTGTAAA 4 156 1 CTTTTACGTCTTCTCCTGCGATGATAGAA 5 4 1 GCCTGTAAAGTTCATCGCTTTCTGCTTTCTATCAT 5 30 0 ACTGTATTACTTACTCTCTTCAGCCTGACGGGCTG 5 97 1 GGTCTGAAAGGTCCGCTCTATTTCCCGCCTGCAGA 5 133 1 CGGCGGTGCGTTTTTATCTGCAGGCGGGAAATAGA 5 149 0 GGATTGCGTTTGCGTCTCTACCGGTTTGGTCGGCG 5 182 0 GGATAAAAACGATCGCGCCACTGGCGATGGTCCAT 5 225 1 CTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTG 6 92 0 ATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGT 6 129 0 ATGGCCTTTTTGCGTTTCTACAAACTCTTCCTGTC 6 206 1 TCTTCCTGTCGTCATATCTACAAGCCATCCCCCCA 6 231 1 TTGCTCGCCCGCCATCCTGCGGGCGGC 8 2 1 ACCTCGTTAATGCTGTGCCGCCCGCAGGATGGCGG 8 18 0 * * **** ** ** MAP Score: 2.18067 Motif 14 TTCCGCGGCGCTGGTTTAAAACGTTGGACTGTT 1 1 1 AAGGGCATTTCAATCAGCCTGGGGCGATAACACCGCAAAATG 4 84 1 GCAATAACATCTCTGCGAGACGGCTTAACATGCCTGTTGTAA 4 148 1 ATGCCTGTTGTAAACTGTGAGCCAAAGCGTTGTTTAACCAAG 4 177 1 TTTTACGTCTTCTCCTGCGATGATAGAAAGCAGAAAGCGATG 5 11 1 TTACTCTCTTCAGCCTGACGGGCTGCGGTCTGAAAGGTCCGC 5 107 1 CAGATAAAAACGCACCGCCGCCGACCAAACCGGTAGAGACGC 5 164 1 GCAAACGCAATCCACGGTGCCGGATAAAAACGATCGCGCCAC 5 204 1 AACGATCGCGCCACTGGCGATGGTCCATCCCAGGTGAATTAC 5 232 1 CGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGG 6 68 1 GGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCA 6 120 0 ACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGC 6 153 1 CTAGTTTACCGTATCTGTGGGGGGATGGCTTGTAGATATGAC 6 241 0 * * *** ** * ** MAP Score: 1.72957