AlignACE 3.0 10/20/99
AlignACE2 -i EC_sum_all064_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	943441522
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	ybgC	149	orf, hypothetical protein
#1	tolA	64	membrane spanning protein, required for outer membrane integrity
#2	tolB	132	periplasmic protein involved in the tonb-independent uptake of group A colicins
#3	pal	34	peptidoglycan-associated lipoprotein
#4	b3007	103	orf, hypothetical protein
#5	yiaD	266	putative outer membrane protein

Motif 1
GAATTCTCTTTAAAAAATTATGGGCCGCTCCAGGCC	0	14	1
TAAGGGAGCGTAAAAATTTATGGGCCTGGAGCGGCC	0	36	0
AACATTCTGCTAAATTATCGTGGGCCATCGGTCCAG	2	92	1
TAAACTAGCATGAATATTCGCGGGCGCATCCTGAAG	4	43	1
CCACGCGAGCTAAACACGGTTTCGCCGTCGGTTTCA	5	26	1
GCCGTCGGTTTCAACCAGCATGGGCCCCCAATGGGC	5	49	1
CGGAATATCGTGAGGATGAGTTGGCCAAACCGAAGA	5	96	1
          * **   *  ******
MAP Score: 10.3579

Motif 2
AATTTTTACGCTCCCTTAACTTGCCCTCATTCCCAA	0	54	1
TTCTGACTGCCGCCCATTGGGGGCCCATGCTGGTTG	5	60	0
     CATATCTCCCTTATCTGGACCGATGGCCCAC	2	111	0
AAAAAATTATGGGCCGCTCCAGGCCCATAAATTTTT	0	25	1
GCGGCATAATCTCCCGCCACGGAACCCGTGGCAAAG	5	214	1
GTGGCAACCGGTGCCTGATGTTGACCGTCCGAACAG	2	22	0
AAAAACTGTTCGCCTGTTACCCGCTCTCTTTCAAGC	1	27	0
CTTGCCCTCATTCCCAAACCTCAATCGCGCGCGTAT	0	73	1
          *****    *  ****
MAP Score: 7.889

Motif 3
TTAAAAAATTATGGGCCGCTCCAGGCCCATAAATT	0	23	1
GACCGTCCGAACAGTCAACATCGCGA         	2	1	0
GACTGTTCGGACGGTCAACATCAGGCACCGGTTGC	2	20	1
AACATCAGGCACCGGTTGCCACGGGGTTCTGGTAG	2	36	1
CTGCTAAATTATCGTGGGCCATCGGTCCAGATAAG	2	98	1
TATTCATGCTAGTTTAGACATCCAGACGTATAAAA	4	24	0
CATGAATATTCGCGGGCGCATCCTGAAGAATTGGC	4	51	1
ATTTGCGAAAATTTTCTGCTTTATGCCAATTCTTC	4	75	0
GCTCGCGTGGCGCGTTAGCCACAGGA         	5	1	0
GAGCTAAACACGGTTTCGCCGTCGGTTTCAACCAG	5	32	1
TGGGCCCCCAATGGGCGGCAGTCAGAACGGAATAT	5	69	1
CCGTGGCGGGAGATTATGCCGCGTGAACATGAAGA	5	201	0
TAACCTTTTTATTCTTTGCCACGGGTTCCGTGGCG	5	228	0
          ** **  *** ** *
MAP Score: 6.85131

Motif 4
TTCTTTGCCACGGGTTCCGTGGCGGGAGATTAT	5	219	0
CATCAGGCACCGGTTGCCACGGGGTTCTGGTAG	2	38	1
GAGCTAAACACGGTTTCGCCGTCGGTTTCAACC	5	32	1
CCAATTCTTCAGGATGCGCCCGCGAATATTCAT	4	52	0
GAATATCGTGAGGATGAGTTGGCCAAACCGAAG	5	98	1
AATAATCTTCATGTTCACGCGGCATAATCTCCC	5	196	1
TCTCCCTTATCTGGACCGATGGCCCACGATAAT	2	105	0
     TCCTGTGGCTAACGCGCCACGCGAGCTA	5	5	1
TGAAAGAGAGCGGGTAACAGGCGAACAGTTTTT	1	30	1
          *** * ** ****
MAP Score: 3.544

Motif 5
CCCAAACCTCAATCGCGCGCGTATAGTAGC	0	85	1
CTTTTGTTGCATTACCGGGATGTAAA    	0	133	1
CCGAACAGTCAACATCGCGA          	2	0	0
TCGGACGGTCAACATCAGGCACCGGTTGCC	2	26	1
AAACTACCAGAACCCCGTGGCAACCGGTGC	2	44	0
ATTCTGCTAAATTATCGTGGGCCATCGGTC	2	95	1
TAGCATGAATATTCGCGGGCGCATCCTGAA	4	48	1
GTCAGAACGGAATATCGTGAGGATGAGTTG	5	89	1
ATTTCCGAGTATTCCCAGGAATAATCTTCA	5	177	1
CACGCGGCATAATCTCCCGCCACGGAACCC	5	211	1
          **********
MAP Score: 3.0856