AlignACE 3.0 10/20/99
AlignACE2 -i EC_sum_all070_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	943441689
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	mog	114	required for the efficient incorporation of molybdate into molybdoproteins
#1	moaA	300	molybdopterin biosynthesis, protein A
#2	moaB	21	molybdopterin biosynthesis, protein B
#3	ycbK	180	orf, hypothetical protein
#4	ycbL	26	orf, hypothetical protein
#5	b1497	36	putative enzyme
#6	b1498	300	putative sulfatase
#7	yifB	300	putative 2-component regulator

Motif 1
   TCATTCTTAGCGTGACCGGGAAGTCGGT	0	7	1
TCAGAAGAGGTAGCGTGACCGACTTCCCGGT	0	24	0
TCATTCTGTTTAACGAGACTGTTTAAACGGA	0	84	1
CCTTATTCTGTAGCGAAATAGCACGATCATG	1	79	1
CATGATTACATAGCGAAAGTGTGGATGGTAA	1	120	1
TCGTAATAATTAGCATGATTGGGGGCGATTC	3	36	1
  TAATTGCTTAACGAAACAGGGGCAGT   	4	8	1
GTTAGTCACATAAAGAGATAGCAGATTTAGC	6	241	0
          ********* *
MAP Score: 9.12741

Motif 2
GGGCGAAGGAAGAAATGACTTCGCCTCCCGT	1	263	1
AGTAGTTCGGGGAAATCAGTTGTCGTAATAA	3	14	1
ATTTATTGAAATAAATAAGTGACATCCATCA	6	31	1
ATGCAAGTGCATAAATATGTGATGGATGTCA	6	50	0
TTGATATTTAATAAATTATTGCATTTTACTG	6	124	0
TTAAATATCAATAAATTAGTTGTTTATCGGC	6	144	1
TTTATCGGCGAGAAATTACTTAATAGAACAG	6	166	1
TTTTACGAAGAGAAATAAGTGGATGTAAGTG	6	274	0
TTTTTTAAAAATAAAATAGTGAGTGAAAAAA	7	112	1
          ****** ****
MAP Score: 7.92383

Motif 3
         CAAGATTTTTCCGTTTAAACAGT	0	101	0
TGGTAAAAATCTCATTTACACGCTAGTATCGG	1	145	1
AGAGTGTTTAGTGGTTATGCCGATACTAGCGT	1	164	0
AACTGATACGGTGCTTTGGCCGTGACAATGCT	1	214	1
   CTGATCTCTCCTTTTGACGTT        	2	2	0
ATTACGACAACTGATTTCCCCGAACTACTTCA	3	11	0
CTTCATGCGGCGGATTTTTCCGCCGCCTTA  	5	16	1
GCTTTATGGACTGTTTTTTCCCTTTTTTTAGC	6	211	1
AGTACAAGATATTTTTTGGCCGATTTTTATGA	7	50	1
CTCGTAGTTCATCCTTTGTCCGCTGCATTTTT	7	174	1
 AAGATATCGCTGCTGTAGCCCGCTAATTCGT	7	279	0
          *** *** ****
MAP Score: 6.40886

Motif 4
GTAAATGAGATTTTTACCATCCACACTTTCGCTATGTAA	1	125	0
GTAAAAATCTCATTTACACGCTAGTATCGGCATAACCAC	1	147	1
GTTAAGGTGCCTCTTGTGCGCCAGAAGTGCATATAAACG	3	123	1
     CGCGTTGTTTTTAGGCGATATATTTATTGAAATA	6	5	1
GTTGCATGATTATTTATGATCTCAATTCTGCATTTTGTC	6	86	1
ATAAATTAGTTGTTTATCGGCGAGAAATTACTTAATAGA	6	154	1
TGTTTTTTCCCTTTTTTTAGCTAAATCTGCTATCTCTTT	6	222	1
TACATCCACTTATTTCTCTTCGTAAAATTACT       	6	278	1
TAGTACAAGATATTTTTTGGCCGATTTTTATGATGCGTT	7	49	1
GAAATTGAATTTTTTTCACTCACTATTTTATTTTTAAAA	7	114	0
CGTAGTTCATCCTTTGTCCGCTGCATTTTTGCGAGCATC	7	176	1
          * *** *  **   *  **
MAP Score: 5.94447

Motif 5
TAAAACCGCCATTTTCCCTTATTCTGTAGCGA	1	63	1
GCGAAGTCATTTCTTCCTTCGCCCTGGTGGCA	1	255	0
GTTATCGTTTATATGCACTTCTGGCGCACAAG	3	135	0
CATCACATATTTATGCACTTGCATAACCTGTT	6	57	1
TATGGACTGTTTTTTCCCTTTTTTTAGCTAAA	6	215	1
TTATGTGACTAACTTCACTTACATCCACTTAT	6	259	1
AAATTGAATTTTTTTCACTCACTATTTTATTT	7	120	0
AGTATGAATGTTGTTCCCTTCCTCGTAGTTCA	7	153	1
AGAACAACTCAACTTCACTTGCACAAATAAAC	7	226	1
          ** ******* *
MAP Score: 5.36949

Motif 6
CCATTTTCCCTTATTCTGTAGCGAAATAGCACGATCATG	1	71	1
GCTATATACATGATTACATAGCGAAAGTGTGGATGGTAA	1	112	1
TCTTGACGTCTGCTTTACGGGCGGTTAAGGTGCCTCTTG	3	100	1
          TAATTGCTTAACGAAACAGGGGCAGT   	4	0	1
      CGCGTTGTTTTTAGGCGATATATTTATTGAAAT	6	4	1
ATGCAATAATTTATTAAATATCAATAAATTAGTTGTTTA	6	131	1
AATAAATTAGTTGTTTATCGGCGAGAAATTACTTAATAG	6	153	1
        AGTAATTTTACGAAGAGAAATAAGTGGATGT	6	279	0
TAGTACAAGATATTTTTTGGCCGATTTTTATGATGCGTT	7	49	1
CACTATTTTATTTTTAAAAAACAACAATTTATATTGAAA	7	94	0
          *  **    * *** * **
MAP Score: 3.80462

Motif 7
AGTCGGTCACGCTACCTCTTCTGAAGCCTG	0	31	1
CCCCAATCATGCTAATTATTACGACAACTG	3	30	0
GGGCGGTTAAGGTGCCTCTTGTGCGCCAGA	3	118	1
AGCTAAATCTGCTATCTCTTTATGTGACTA	6	240	1
CAAAACCTATGGTAACTCTTTAGGCATTCC	7	15	0
AATTTTAGTGGCTGATTCCTGTTTATTTGT	7	248	0
GCTGTAGCCCGCTAATTCGTGAATTTTAGT	7	269	0
          **********
MAP Score: 2.55718

Motif 8
GGTCACGCTACCTCTTCTGAAGCCTGTCTGTCACT	0	35	1
GCCATTTTCCCTTATTCTGTAGCGAAATAGCACGA	1	70	1
ACCTGGGTCAACTGATACGGTGCTTTGGCCGTGAC	1	205	1
AAACGATAACATTGACCTGTAGACTTGATTATC  	3	157	1
CATGCGGCGGATTTTTCCGCCGCCTTA        	5	19	1
TATGCACTTGCATAACCTGTTGCATGATTATTTAT	6	68	1
TTTTTGGCCGATTTTTATGATGCGTTTAATAATTT	7	62	1
GTAGTTCATCCTTTGTCCGCTGCATTTTTGCGAGC	7	177	1
          ***  ****  ** *
MAP Score: 1.6552