Computational Discovery of Overlapping Transcriptional Units in the Human & Mouse Genomes

Candidate UniGene cluster:UniGene Cluster Hs.155182
Description:KIAA1036 protein
Best-Of-UniGene (BOU) SequenceNM_014909
Genomic Coordiantes Displayed:Bases 3442000 to 3498000 of contig Hs14_10297_24
BOU Orientation Along Contig:LEFT-TO-RIGHT with respect to contig
Link to JPEG of genomic mappingHs.155182.jpeg
Best sense EST/protein match:NM_014909 matched ref|NP_055724.1| (NM_014909) KIAA1036 protein [Homo sapiens] (E = 0.0)
Best antisense EST/protein match:No protein match with an e-value of less than 1e-10


This page provides information on exon-intron structure, mouse-human homologies, polyA signals & locations, and protein homologies of ESTs from directionally-cloned libraries that are members of a UniGene cluster that is a candidate for containing ESTs derived from distinct, overlapping sense & antisense transcripts.
The upper portion of the graph is reserved for the exon-intron mappings of ESTs oriented consistently with the Best-Of-UniGene (BOU) sequence (in gold). The lower portion of the graph is reserved for the exon-intron mappings of ESTs oriented opposite the BOU sequence (in white). Dividing these portions are the exon-intron mapping of the BOU sequence itself (in blue and green). Immedietely below the BOU are HUMMUS-defined streches of sequences highly conserved between mouse and human. The height of each bar is reflective of the % identity of human-mouse homology over a 100 base-pair window centered at a given base. At the left of the graph, the GenBank accession number of the BOU or EST sequence represented along that Y-axis position is listed, along with the UniLib identification number of the library from which that EST was derived.Below the graph, the GenBank accession numbers of each of the sense & antisense ESTs are provided, along with information on which have polyA signals and protein homologies, as determined by the NCBI.

Below are listed the same set of ESTs as is depicted above, with information of read direction, tissue type, protein similarity (P), and poly-adenylation signal (A).

ANTISENSE ESTs
  AW089827 cDNA clone IMAGE:2593506 ovary 3' read Polyadenylation signal
  BE311990 cDNA clone IMAGE:3510578 neuroblastoma 5' read
  BF311684 cDNA clone IMAGE:4126457 neuroblastoma 5' read
  BF315820 cDNA clone IMAGE:4129926 neuroblastoma 5' read
  AV705485 cDNA clone ADBCNA10 adrenal gland 5' read
  BG232096 cDNA clone IMAGE:4142752 lymphocyte 3' read Polyadenylation signal
  AI590135 cDNA clone IMAGE:2178844 uterus 3' read 2.5 kbPolyadenylation signal
  W87810 cDNA clone IMAGE:417084 pool 3' read 1.2 kbPolyadenylation signal
  AI880832 cDNA clone IMAGE:2354794 aorta 3' read
  AI880840 cDNA clone IMAGE:2354795 aorta 3' read
  BE277733 cDNA clone IMAGE:2966964 melanotic melanoma 5' read
  BG913094 cDNA clone IMAGE:4938813 anaplastic oligodendroglioma with 1p/19q loss 5' read
  BI907467 cDNA clone IMAGE:5212744 leukocyte 5' read
  AA378316 cDNA clone ATCC:182744 synovial membrane 5' read
  AA325544 cDNA clone ATCC:126049 brain 5' read

SENSE ESTs

  BF347497 cDNA clone IMAGE:4156063 anaplastic oligodendroglioma with 1p/19q loss 5' read
  H08665 cDNA clone IMAGE:45849 brain 5' read 1.6 kb
  BI828418 cDNA clone IMAGE:5170122 medulla 5' read
  BI554097 cDNA clone IMAGE:5309810 anaplastic oligodendroglioma with 1p/19q loss 5' read
  BE019381 cDNA clone IMAGE:3010121 rhabdomyosarcoma 5' read
  BF337884 cDNA clone IMAGE:4183801 glioblastoma with egfr amplification 5' read
  BE795940 cDNA clone IMAGE:3945097 small cell carcinoma 5' read
  BF338999 cDNA clone IMAGE:4184154 glioblastoma with egfr amplification 5' read
  AW247724 cDNA clone IMAGE:2820261 small cell carcinoma 5' read
  R56324 cDNA clone IMAGE:40761 brain 5' read 1.7 kb
  T80167 cDNA clone IMAGE:24736 brain 5' read 2.1 kb
  Z45263 cDNA clone c2lb03 brain
  BE797687 cDNA clone IMAGE:3938804 small cell carcinoma 5' read
  BE798262 cDNA clone IMAGE:3938803 small cell carcinoma 5' read
  R25272 cDNA clone IMAGE:36562 brain 5' read 1.9 kb
  AW249439 cDNA clone IMAGE:2819339 small cell carcinoma 5' read
  BG820939 cDNA clone IMAGE:4931891 anaplastic oligodendroglioma with 1p/19q loss 5' read
  AL134336 cDNA clone DKFZp547O184 brain 5' read
  AW250622 cDNA clone IMAGE:2821934 small cell carcinoma 5' read
  BE264145 cDNA clone IMAGE:3535340 small cell carcinoma 5' read
  AA089941 cDNA clone (no-name) heart 5' read
  D80733 cDNA clone GEN100F10 brain 5' read
  D80897 cDNA clone GEN114D10 brain 5' read
  D81203 cDNA clone GEN137D10 brain 5' read
  D81384 cDNA clone GEN161C03 brain 5' read
  D81569 cDNA clone GEN173E03 brain 5' read
  C17955 cDNA clone GEN555C12 placenta 5' read
  D59965 cDNA clone GEN078A05 brain 5' read
  C15555 cDNA clone GEN150F10 aorta 5' read
  AW250045 cDNA clone IMAGE:2819383 small cell carcinoma 3' read
  BE349025 cDNA clone IMAGE:3149935 malignant melanoma, metastatic to lymph node 3' read
  AL041425 cDNA clone DKFZp434D1417 testis 5' read
  AI811178 cDNA clone IMAGE:2261913 uterus 3' read 3.9 kb
  R56242 cDNA clone IMAGE:40761 brain 3' read 1.7 kb
  AI624553 cDNA clone IMAGE:2230082 pancreas 3' read 2.5 kb
  BF528296 cDNA clone IMAGE:4180629 anaplastic oligodendroglioma with 1p/19q loss 5' read
  AW246748 cDNA clone IMAGE:2821934 small cell carcinoma 3' read
  AI801580 cDNA clone IMAGE:2185646 stomach 3' read 2.6 kb
  AI921274 cDNA clone IMAGE:2456111 pancreas 3' read
  AI873697 cDNA clone IMAGE:2437292 uterus 3' read 1.2 kb
  AI735303 cDNA clone IMAGE:2354559 aorta 3' read Polyadenylation signal
  AA704552 cDNA clone IMAGE:451139 pool 3' read
  C14649 cDNA clone GEN078A05 aorta 3' read
  R46625 cDNA clone IMAGE:36562 brain 3' read 1.9 kb
  D53593 cDNA clone GEN114D10 brain 3' read
  D53162 cDNA clone GEN100F10 brain 3' read