Computational Discovery of Overlapping Transcriptional Units in the Human & Mouse Genomes

Candidate UniGene cluster:UniGene Cluster Hs.172851
Description:arginase, type II
Best-Of-UniGene (BOU) SequenceNM_001172
Genomic Coordiantes Displayed:Bases 1782000 to 1838000 of contig Hs14_10185_24
BOU Orientation Along Contig:LEFT-TO-RIGHT with respect to contig
Link to JPEG of genomic mappingHs.172851.jpeg
Best sense EST/protein match:AU128893 matched ref|NP_001163.1| (NM_001172) arginase, type II precursor; kidney arginase; (E = e-104)
Best antisense EST/protein match:AW167476 matched ref|NP_006361.1| (NM_006370) vesicle-associated soluble NSF attachment protein (E = 5e-29)


This page provides information on exon-intron structure, mouse-human homologies, polyA signals & locations, and protein homologies of ESTs from directionally-cloned libraries that are members of a UniGene cluster that is a candidate for containing ESTs derived from distinct, overlapping sense & antisense transcripts.
The upper portion of the graph is reserved for the exon-intron mappings of ESTs oriented consistently with the Best-Of-UniGene (BOU) sequence (in gold). The lower portion of the graph is reserved for the exon-intron mappings of ESTs oriented opposite the BOU sequence (in white). Dividing these portions are the exon-intron mapping of the BOU sequence itself (in blue and green). Immedietely below the BOU are HUMMUS-defined streches of sequences highly conserved between mouse and human. The height of each bar is reflective of the % identity of human-mouse homology over a 100 base-pair window centered at a given base. At the left of the graph, the GenBank accession number of the BOU or EST sequence represented along that Y-axis position is listed, along with the UniLib identification number of the library from which that EST was derived.Below the graph, the GenBank accession numbers of each of the sense & antisense ESTs are provided, along with information on which have polyA signals and protein homologies, as determined by the NCBI.

Below are listed the same set of ESTs as is depicted above, with information of read direction, tissue type, protein similarity (P), and poly-adenylation signal (A).

ANTISENSE ESTs
  BE785005 cDNA clone IMAGE:3881339 large cell carcinoma 5' read
  R54812 cDNA clone IMAGE:40253 brain 3' read 1.6 kb
  AW268376 cDNA clone IMAGE:2816582 two pooled squamous cell carcinomas 3' read
  AL135372 cDNA clone DKFZp762G0115 melanoma (mewo cell line) 3' read
  BG236096 cDNA clone IMAGE:4141906 lymphocyte 3' read
  AI499518 cDNA clone IMAGE:2177358 uterus 3' read 1.4 kb
  BF969785 cDNA clone IMAGE:4360493 adrenal cortex carcinoma, cell line 5' read
  N66717 cDNA clone IMAGE:284840 ear 3' read
  BE379627 cDNA clone IMAGE:3510905 carcinoma, cell line 3' read
  BF573416 cDNA clone IMAGE:4253891 melanotic melanoma, high mdr 5' read
  AL135371 cDNA clone DKFZp762G0115 melanoma (mewo cell line) 5' read Protein similarity
  AV712705 cDNA clone DCABAC06 5' read
  BE566121 cDNA clone IMAGE:3681559 carcinoma, cell line 5' read Protein similarity
  BE870915 cDNA clone IMAGE:3852689 adenocarcinoma 5' read Protein similarity
  BE380051 cDNA clone IMAGE:3510905 carcinoma, cell line 5' read Protein similarity
  BG163790 cDNA clone IMAGE:4453158 hypernephroma, cell line 5' read Protein similarity
  BG431341 cDNA clone IMAGE:4613338 kidney 5' read Protein similarity
  BF212074 cDNA clone IMAGE:4047262 from chronic myelogenous leukemia 5' read Protein similarity
  AV725813 cDNA clone HTCBUB03 hypothalamus 5' read Protein similarity
  R42976 cDNA clone IMAGE:32275 brain 3' read 2.2 kbPolyadenylation signal
  BM128395 cDNA clone (no-name) islets of langerhans 3' read Polyadenylation signal
  R37033 cDNA clone IMAGE:25952 brain 3' read 1.8 kbProtein similarityPolyadenylation signal
  H17612 cDNA clone IMAGE:50480 brain 3' read 0.9 kbProtein similarityPolyadenylation signal
  F09641 cDNA clone c34d07 brain 3' read Protein similarityPolyadenylation signal
  T65164 cDNA clone IMAGE:21778 brain 3' read 0.9 kbProtein similarity
  BG036588 cDNA clone IMAGE:4427802 adenocarcinoma, cell line 5' read
  R55110 cDNA clone IMAGE:40253 brain 5' read 1.6 kb
  BM128628 cDNA clone (no-name) islets of langerhans 5' read
  Z45749 cDNA clone cztc06 brain
  BI087598 cDNA clone IMAGE:4993677 placenta 5' read Protein similarity
  R11944 cDNA clone IMAGE:25952 brain 5' read 1.8 kb
  T65365 cDNA clone IMAGE:21778 brain 5' read 0.9 kb
  H17723 cDNA clone IMAGE:50480 brain 5' read 0.9 kb
  F11995 cDNA clone c34d07 brain
  F11996 cDNA clone c34d08 brain
  BF528426 cDNA clone IMAGE:4181515 anaplastic oligodendroglioma with 1p/19q loss 5' read
  BF794367 cDNA clone IMAGE:4338764 lymphoma, cell line 5' read
  R18082 cDNA clone IMAGE:32275 brain 5' read 2.2 kb
  BG621538 cDNA clone IMAGE:4730767 placenta 5' read
  BE886923 cDNA clone IMAGE:3907969 leiomyosarcoma 5' read Protein similarity
  AW468105 cDNA clone IMAGE:2920697 myeloid cells, 18 pooled cml cases, bcr/abl rearrangement 3' read
  BE883034 cDNA clone IMAGE:3911483 leiomyosarcoma 5' read Protein similarity
  BE874556 cDNA clone IMAGE:3892001 large cell carcinoma, undifferentiated 5' read Protein similarity
  BI253881 cDNA clone IMAGE:5113648 choriocarcinoma 5' read Protein similarity
  AI358215 cDNA clone IMAGE:1989475 uterus 3' read 1.5 kbProtein similarityPolyadenylation signal
  AA365564 cDNA clone ATCC:170268 brain 3' read Protein similarityPolyadenylation signal
  AI721010 cDNA clone IMAGE:2332861 colon 3' read Protein similarityPolyadenylation signal
  AI719735 cDNA clone IMAGE:2353066 aorta 3' read Protein similarity
  AA365565 cDNA clone ATCC:170268 brain 5' read Protein similarity
  AL157587 cDNA clone DKFZp761H2216 amygdala 5' read Protein similarity
  AW167476 cDNA clone IMAGE:2634268 uterus 3' read
  BG914140 cDNA clone IMAGE:4937878 anaplastic oligodendroglioma with 1p/19q loss 5' read
  Z40252 cDNA clone c1xb10 brain 3' read

SENSE ESTs

  AA306175 cDNA clone ATCC:160382 5' read Protein similarity
  BG401473 cDNA clone IMAGE:4594344 kidney 5' read Protein similarity
  BI772189 cDNA clone IMAGE:5205417 pooled lung and spleen 5' read Protein similarity
  BI762492 cDNA clone IMAGE:5188656 pooled colon, kidney, stomach 5' read Protein similarity
  BF674548 cDNA clone IMAGE:4274290 prostate 5' read Protein similarity
  AU098398 cDNA clone CAS02421 Protein similarity
  BF973368 cDNA clone IMAGE:4330757 leiomyosarcoma cell line 5' read Protein similarity
  BG338890 cDNA clone IMAGE:4554668 leiomyosarcoma cell line 5' read Protein similarity
  BE266993 cDNA clone IMAGE:3535466 small cell carcinoma 5' read Protein similarity
  BI764277 cDNA clone IMAGE:5186392 pooled colon, kidney, stomach 5' read Protein similarity
  BI918455 cDNA clone IMAGE:5240482 brain 5' read Protein similarity
  AU128893 cDNA clone NT2RP2004414 5' read Protein similarity
  AA309035 cDNA clone ATCC:128408 5' read Protein similarity
  BG394222 cDNA clone IMAGE:4578821 retinoblastoma 5' read Protein similarity
  BI752015 cDNA clone IMAGE:5192910 brain 5' read Protein similarity
  BE792468 cDNA clone IMAGE:3939030 small cell carcinoma 5' read Protein similarity
  AW411419 cDNA clone IMAGE:2964483 rhabdomyosarcoma 5' read Protein similarity
  BF220324 cDNA clone IMAGE:2964483 rhabdomyosarcoma 5' read Protein similarity
  BG394184 cDNA clone IMAGE:4579049 retinoblastoma 5' read Protein similarity
  BI821051 cDNA clone IMAGE:5176778 pooled brain, lung, testis 5' read Protein similarity
  BG826499 cDNA clone IMAGE:4903020 rhabdomyosarcoma 5' read Protein similarity
  BE251103 cDNA clone IMAGE:3343420 retinoblastoma 5' read Protein similarity
  BF033333 cDNA clone IMAGE:3861463 adenocarcinoma 5' read Protein similarity
  BE973862 cDNA clone IMAGE:3951112 prostate 5' read Protein similarity
  F12274 cDNA clone c37h07 brain Protein similarity
  T64853 cDNA clone IMAGE:22153 brain 5' read 1.4 kbProtein similarity
  R52334 cDNA clone IMAGE:39074 brain 5' read 1.3 kbProtein similarity
  BE549353 cDNA clone IMAGE:3461848 choriocarcinoma 5' read Protein similarity
  BG433376 cDNA clone IMAGE:4610274 kidney 5' read Protein similarity
  BF035058 cDNA clone IMAGE:3859692 adenocarcinoma 5' read Protein similarity
  F15256 cDNA clone (no-name) brain Protein similarity
  AA703004 cDNA clone IMAGE:447193 pool 3' read Protein similarity
  AI310510 cDNA clone IMAGE:1914661 kidney 3' read 0.7 kbProtein similarity
  AU151115 cDNA clone NT2RP2004414 3' read Protein similarity
  AA356384 cDNA clone ATCC:158542 5' read Protein similarity
  R52335 cDNA clone IMAGE:39074 brain 3' read 1.3 kbProtein similarity
  T72595 cDNA clone IMAGE:22153 brain 3' read 1.4 kb
  F09900 cDNA clone c37h07 brain 3' read
  BF525686 cDNA clone IMAGE:4212963 glioblastoma with egfr amplification 5' read
  BI816886 cDNA clone IMAGE:4212963 glioblastoma with egfr amplification 5' read
  AW473407 cDNA clone IMAGE:2882193 uterus 3' read
  AL135439 cDNA clone DKFZp762O0615 melanoma (mewo cell line) 5' read Polyadenylation signal
  AW411420 cDNA clone IMAGE:2964483 rhabdomyosarcoma 3' read
  AI354222 cDNA clone IMAGE:1981336 kidney 3' read 1.4 kbProtein similarityPolyadenylation signal
  AI282597 cDNA clone IMAGE:1980666 kidney 3' read 0.9 kbProtein similarityPolyadenylation signal
  AA873168 cDNA clone IMAGE:1472707 kidney 3' read 1.0 kb