Computational Discovery of Overlapping Transcriptional Units in the Human & Mouse Genomes

Candidate UniGene cluster:UniGene Cluster Hs.182429
Description:protein disulfide isomerase-related protein
Best-Of-UniGene (BOU) SequenceBC012142
Genomic Coordiantes Displayed:Bases 469684 to 594401 of contig Hs2_5537_24
BOU Orientation Along Contig:RIGHT-TO-LEFT with respect to contig
Link to JPEG of genomic mappingHs.182429.jpeg
Best sense EST/protein match:BC012142 matched gb|AAH12142.1|AAH12142 (BC012142) Unknown (protein for MGC:20253) [Homo sapiens] (E = 0.0)
Best antisense EST/protein match:AU120928 matched ref|NP_005733.1| (NM_005742) protein disulfide isomerase-related protein [Homo (E = e-103)


This page provides information on exon-intron structure, mouse-human homologies, polyA signals & locations, and protein homologies of ESTs from directionally-cloned libraries that are members of a UniGene cluster that is a candidate for containing ESTs derived from distinct, overlapping sense & antisense transcripts.
The upper portion of the graph is reserved for the exon-intron mappings of ESTs oriented consistently with the Best-Of-UniGene (BOU) sequence (in gold). The lower portion of the graph is reserved for the exon-intron mappings of ESTs oriented opposite the BOU sequence (in white). Dividing these portions are the exon-intron mapping of the BOU sequence itself (in blue and green). Immedietely below the BOU are HUMMUS-defined streches of sequences highly conserved between mouse and human. The height of each bar is reflective of the % identity of human-mouse homology over a 100 base-pair window centered at a given base. At the left of the graph, the GenBank accession number of the BOU or EST sequence represented along that Y-axis position is listed, along with the UniLib identification number of the library from which that EST was derived.Below the graph, the GenBank accession numbers of each of the sense & antisense ESTs are provided, along with information on which have polyA signals and protein homologies, as determined by the NCBI.

Below are listed the same set of ESTs as is depicted above, with information of read direction, tissue type, protein similarity (P), and poly-adenylation signal (A).

ANTISENSE ESTs
  BI548165 cDNA clone IMAGE:5276091 hippocampus, cell line 5' read Protein similarity
  AU134014 cDNA clone OVARC1001101 ovary, tumor tissue 5' read Protein similarity
  BI832969 cDNA clone IMAGE:5229748 pooled pancreas and spleen 5' read Protein similarity
  AA223320 cDNA clone IMAGE:650921 5' read 1.1 kbProtein similarity
  BF316029 cDNA clone IMAGE:4125217 neuroblastoma 5' read Protein similarity
  BI489788 cDNA clone IMAGE:5172890 pooled brain, lung, testis 5' read Protein similarity
  AA336850 cDNA clone ATCC:138568 uterus 5' read Protein similarity
  BE536320 cDNA clone IMAGE:3449020 placenta 5' read Protein similarity
  AU132626 cDNA clone NT2RP4000222 5' read Protein similarity
  BF339862 cDNA clone IMAGE:4186936 glioblastoma with egfr amplification 5' read Protein similarity
  BF128801 cDNA clone IMAGE:4053812 primary b-cells from tonsils (cell line) 5' read Protein similarity
  BF031014 cDNA clone IMAGE:3828405 hypernephroma 5' read Protein similarity
  BE251317 cDNA clone IMAGE:3343980 retinoblastoma 5' read Protein similarity
  AA314548 cDNA clone ATCC:111144 5' read Protein similarity
  BI767745 cDNA clone IMAGE:5210236 pooled lung and spleen 5' read Protein similarity
  BI767744 cDNA clone IMAGE:5210188 pooled lung and spleen 5' read Protein similarity
  BI751990 cDNA clone IMAGE:5192760 brain 5' read Protein similarity
  AA232147 cDNA clone IMAGE:664322 5' read 1.1 kbProtein similarity
  BE618272 cDNA clone IMAGE:3866338 retinoblastoma 5' read Protein similarity
  BG702814 cDNA clone IMAGE:4817355 hippocampus, cell line 5' read Protein similarity
  AU120928 cDNA clone HEMBB1001725 whole embryo, mainly body 5' read Protein similarity
  AU141160 cDNA clone THYRO1000112 thyroid gland 5' read Protein similarity
  AA333235 cDNA clone ATCC:134911 whole embryo 5' read Protein similarity
  AU127773 cDNA clone NT2RP2002027 5' read Protein similarity
  BF171544 cDNA clone (no-name) blood Protein similarity
  BE535388 cDNA clone IMAGE:3445138 placenta 5' read Protein similarity
  BE780000 cDNA clone IMAGE:3871260 retinoblastoma 5' read Protein similarity
  AU139328 cDNA clone PLACE1010375 placenta 5' read Protein similarity
  AU137070 cDNA clone PLACE1005708 placenta 5' read Protein similarity
  BF317428 cDNA clone IMAGE:4136224 neuroblastoma 5' read Protein similarity
  AW630486 cDNA clone IMAGE:2969390 2 pooled high-grade transitional cell tumors 5' read Protein similarity
  AU132147 cDNA clone NT2RP3003882 5' read Protein similarity
  BE622222 cDNA clone IMAGE:3915837 melanotic melanoma 5' read Protein similarity
  BF970473 cDNA clone IMAGE:4360689 adrenal cortex carcinoma, cell line 5' read Protein similarity
  AU132718 cDNA clone NT2RP4000412 5' read Protein similarity
  BF313610 cDNA clone IMAGE:4129620 neuroblastoma 5' read Protein similarity
  AU135727 cDNA clone PLACE1002766 placenta 5' read Protein similarity
  AU125864 cDNA clone NT2RM4002317 5' read Protein similarity
  AU077258 cDNA clone Zrv62235
  BG331766 cDNA clone IMAGE:4550831 large cell carcinoma 5' read Protein similarity
  BF980914 cDNA clone IMAGE:4395852 duodenal adenocarcinoma, cell line 5' read Protein similarity
  AU119012 cDNA clone HEMBA1004858 whole embryo, mainly head 5' read Protein similarity
  R12659 cDNA clone IMAGE:26470 brain 5' read 1.7 kbProtein similarity
  AA298552 cDNA clone ATCC:177857 5' read Protein similarity
  H15228 cDNA clone IMAGE:49800 brain 5' read 1.9 kbProtein similarity
  H14946 cDNA clone IMAGE:48329 brain 5' read 2.0 kbProtein similarity
  BM043593 cDNA clone IMAGE:5445514 carcinoma, cell line 5' read
  BG680253 cDNA clone IMAGE:4754095 squamous cell carcinoma 5' read Protein similarity
  AU138773 cDNA clone PLACE1009255 placenta 5' read Protein similarity
  BI912721 cDNA clone IMAGE:5240658 brain 5' read Protein similarity
  BE870400 cDNA clone IMAGE:3851423 adenocarcinoma 5' read Protein similarity
  BG421953 cDNA clone IMAGE:4587385 renal cell adenocarcinoma 5' read Protein similarity
  BI830058 cDNA clone IMAGE:5171771 medulla 5' read Protein similarity
  BI827679 cDNA clone IMAGE:5165876 medulla 5' read Protein similarity
  BE778728 cDNA clone IMAGE:3869789 retinoblastoma 5' read Protein similarity
  BI602513 cDNA clone IMAGE:5300863 hypothalamus, cell line 5' read Protein similarity
  BI601361 cDNA clone IMAGE:5300644 hypothalamus, cell line 5' read Protein similarity
  BG700756 cDNA clone IMAGE:4814453 hippocampus, cell line 5' read Protein similarity
  BF696688 cDNA clone IMAGE:4281648 primitive neuroectoderm 5' read Protein similarity
  AU141913 cDNA clone THYRO1001448 thyroid gland 5' read Protein similarity
  BG538125 cDNA clone IMAGE:4690385 lung 5' read Protein similarity
  BF315134 cDNA clone IMAGE:4134884 neuroblastoma 5' read Protein similarity
  BG748152 cDNA clone IMAGE:4842422 normal pigmented retinal epithelium 5' read Protein similarity
  BE871930 cDNA clone IMAGE:3851895 adenocarcinoma 5' read Protein similarity
  BI597202 cDNA clone IMAGE:5302697 hypothalamus, cell line 5' read Protein similarity
  BI199506 cDNA clone IMAGE:4894207 neuroblastoma 5' read Protein similarity
  BE868989 cDNA clone IMAGE:3849067 adenocarcinoma 5' read Protein similarity
  BE870351 cDNA clone IMAGE:3851691 adenocarcinoma 5' read
  AU125499 cDNA clone NT2RM4001685 5' read Protein similarity
  BE896071 cDNA clone IMAGE:3923969 melanotic melanoma 5' read Protein similarity
  BE791969 cDNA clone IMAGE:3940362 small cell carcinoma 5' read Protein similarity
  AU099983 cDNA clone KAT10381 Protein similarity
  AU125205 cDNA clone NT2RM4001202 5' read Protein similarity
  AW629616 cDNA clone IMAGE:2967873 2 pooled high-grade transitional cell tumors 5' read Protein similarity
  BG529737 cDNA clone IMAGE:4698744 embryonal carcinoma 5' read Protein similarity
  BE259949 cDNA clone IMAGE:3502661 neuroblastoma 5' read Protein similarity
  BE783796 cDNA clone IMAGE:3874108 retinoblastoma 5' read Protein similarity
  BE869293 cDNA clone IMAGE:3849459 adenocarcinoma 5' read Protein similarity
  BG111995 cDNA clone IMAGE:4369208 osteosarcoma, cell line 5' read Protein similarity
  BE783163 cDNA clone IMAGE:3873691 retinoblastoma 5' read Protein similarity
  BF979486 cDNA clone IMAGE:4373902 testis, cell line 5' read Protein similarity
  BI906345 cDNA clone IMAGE:5212659 leukocyte 5' read Protein similarity
  BF345768 cDNA clone IMAGE:4153305 anaplastic oligodendroglioma with 1p/19q loss 5' read Protein similarity
  BI832437 cDNA clone IMAGE:5221394 pooled pancreas and spleen 5' read Protein similarity
  BF304361 cDNA clone IMAGE:4121201 rhabdomyosarcoma 5' read Protein similarity
  BI910436 cDNA clone IMAGE:5216791 leukocyte 5' read Protein similarity
  BF347114 cDNA clone IMAGE:4156316 anaplastic oligodendroglioma with 1p/19q loss 5' read Protein similarity
  BG910364 cDNA clone IMAGE:4938332 anaplastic oligodendroglioma with 1p/19q loss 5' read Protein similarity
  F12788 cDNA clone c3ee03 brain Protein similarity
  BG823681 cDNA clone IMAGE:4868264 adenocarcinoma cell line 5' read Protein similarity
  R22682 cDNA clone IMAGE:31416 brain 5' read 3.4 kbProtein similarity
  BF035588 cDNA clone IMAGE:3861101 adenocarcinoma 5' read Protein similarity
  R67155 cDNA clone IMAGE:42483 brain 5' read 1.8 kbProtein similarity
  T75084 cDNA clone IMAGE:22854 brain 5' read 1.8 kbProtein similarity
  T77102 cDNA clone IMAGE:23761 brain 5' read 1.8 kbProtein similarity
  BG257385 cDNA clone IMAGE:4508715 embryonal carcinoma, cell line 5' read Protein similarity
  T77290 cDNA clone IMAGE:23936 brain 5' read 1.8 kbProtein similarity
  BG164970 cDNA clone IMAGE:4453900 hypernephroma, cell line 5' read Protein similarity
  AA297288 cDNA clone ATCC:133568 whole embryo 5' read Protein similarity
  BG028723 cDNA clone IMAGE:4387777 osteosarcoma, cell line 5' read Protein similarity
  AV761703 cDNA clone MDSCDC05 bone marrow 5' read Protein similarity