Computational Discovery of Overlapping Transcriptional Units in the Human & Mouse Genomes

Candidate UniGene cluster:UniGene Cluster Mm.176845
Description:expressed sequence C77604
Best-Of-UniGene (BOU) SequenceBC004766
Genomic Coordiantes Displayed:Bases 92781 to 130276 of contig GA_x5J8B7W4Q9Y
BOU Orientation Along Contig:RIGHT-TO-LEFT with respect to contig
Link to JPEG of genomic mappingMm.176845.jpeg
Best sense EST/protein match:BC004766 matched gb|AAH04766.1|AAH04766 (BC004766) Similar to KIAA0632 protein [Mus musculus] (E = 0.0)
Best antisense EST/protein match:AI132578 matched ref|XP_028488.2| (XM_028488) maternal G10 transcript [Homo sapiens] (E = 4e-85)


This page provides information on exon-intron structure, mouse-human homologies, polyA signals & locations, and protein homologies of ESTs from directionally-cloned libraries that are members of a UniGene cluster that is a candidate for containing ESTs derived from distinct, overlapping sense & antisense transcripts.
The upper portion of the graph is reserved for the exon-intron mappings of ESTs oriented consistently with the Best-Of-UniGene (BOU) sequence (in gold). The lower portion of the graph is reserved for the exon-intron mappings of ESTs oriented opposite the BOU sequence (in white). Dividing these portions are the exon-intron mapping of the BOU sequence itself (in blue and green). Immedietely below the BOU are HUMMUS-defined streches of sequences highly conserved between mouse and human. The height of each bar is reflective of the % identity of human-mouse homology over a 100 base-pair window centered at a given base. At the left of the graph, the GenBank accession number of the BOU or EST sequence represented along that Y-axis position is listed, along with the UniLib identification number of the library from which that EST was derived.Below the graph, the GenBank accession numbers of each of the sense & antisense ESTs are provided, along with information on which have polyA signals and protein homologies, as determined by the NCBI.

Below are listed the same set of ESTs as is depicted above, with information of read direction, tissue type, protein similarity (P), and poly-adenylation signal (A).

ANTISENSE ESTs
  AI116333 cDNA clone IMAGE:1499043 embryo 5' read Protein similarity
  AA274690 cDNA clone IMAGE:766611 kidney 5' read Protein similarity
  AI121133 cDNA clone IMAGE:1498315 embryo 5' read Protein similarity
  AL363314 cDNA clone K9308B53 embryo 5' read Protein similarity
  AA052089 cDNA clone IMAGE:420167 embryo 5' read
  AI892620 cDNA clone IMAGE:605157 embryonal carcinoma 5' read Protein similarity
  BI558275 cDNA clone IMAGE:5293275 tumor, gross tissue 5' read Protein similarity
  AI255539 cDNA clone IMAGE:1886362 liver 5' read Protein similarity
  AA222817 cDNA clone IMAGE:661125 embryo 5' read Protein similarity
  AA638940 cDNA clone IMAGE:1037877 embryo 5' read Protein similarity
  AW105826 cDNA clone IMAGE:2159728 kidney 5' read Protein similarity
  AA153246 cDNA clone IMAGE:605157 embryonal carcinoma 5' read
  BM083278 cDNA clone IMAGE:3594956 infiltrating ductal carcinoma 5' read Polyadenylation signal
  W99887 cDNA clone IMAGE:425274 embryo 5' read Protein similarity
  AA051275 cDNA clone IMAGE:478907 embryo 5' read Protein similarity
  BE531352 cDNA clone IMAGE:3594956 infiltrating ductal carcinoma 5' read Protein similarity
  W77578 cDNA clone IMAGE:400144 embryo 5' read Protein similarity
  BB578495 cDNA clone 6430501L23 olfactory brain 5' read
  BF124414 cDNA clone IMAGE:4024259 tumor, gross tissue 5' read Protein similarity
  BB578292 cDNA clone 6430500G01 olfactory brain 5' read
  AA066789 cDNA clone IMAGE:521065 muscle 5' read Protein similarity
  AA444533 cDNA clone IMAGE:832007 mammary gland 5' read
  BG077681 cDNA clone H3018E01 5' read Protein similarity
  AA002899 cDNA clone IMAGE:426040 embryo 5' read Protein similarity
  AA009016 cDNA clone IMAGE:440946 embryo 5' read Protein similarity
  AA958872 cDNA clone IMAGE:1347169 mammary gland 5' read Protein similarity
  AA982473 cDNA clone IMAGE:1617346 hypothalamus 5' read Protein similarity
  AA030834 cDNA clone IMAGE:464805 embryo 5' read Protein similarity
  BI648457 cDNA clone IMAGE:5318022 tumor, gross tissue 5' read Protein similarity
  D77350 cDNA clone A2F06 embryonal carcinoma
  AA103702 cDNA clone IMAGE:556062 embryo 5' read
  AA221861 cDNA clone IMAGE:658823 embryo 5' read Protein similarity
  AA254917 cDNA clone IMAGE:719709 liver 5' read Protein similarity
  AA270165 cDNA clone IMAGE:748604 liver 5' read Protein similarity
  BF139790 cDNA clone IMAGE:4013561 tumor, metastatic to mammary 5' read Protein similarity
  BF138032 cDNA clone IMAGE:4012470 tumor, metastatic to mammary 5' read Protein similarity
  W80267 cDNA clone IMAGE:402545 embryo 5' read
  C77604 cDNA clone J0034D08 embryo 3' read Protein similarityPolyadenylation signal
  BE376132 cDNA clone IMAGE:3592531 tumor, biopsy sample 5' read Protein similarity
  AI132578 cDNA clone IMAGE:1499043 embryo 3' read Protein similarityPolyadenylation signal
  W99931 cDNA clone IMAGE:425080 embryo 5' read Protein similarity
  AW544320 cDNA clone C0180D05 3' read Protein similarityPolyadenylation signal
  AI194719 cDNA clone IMAGE:1886362 liver 3' read Protein similarityPolyadenylation signal
  BG064342 cDNA clone H3018E01 3' read Protein similarityPolyadenylation signal
  C78709 cDNA clone J0053G03 embryo 3' read Protein similarityPolyadenylation signal
  AA002580 cDNA clone IMAGE:436978 embryo 5' read Protein similarity
  AA518695 cDNA clone IMAGE:905139 colon 5' read Protein similarity
  AI119997 cDNA clone IMAGE:1399013 mammary gland 5' read Protein similarity
  AA032686 cDNA clone IMAGE:465400 embryo 5' read Protein similarity
  AI120565 cDNA clone IMAGE:1498315 embryo 3' read Protein similarityPolyadenylation signal
  AI172995 cDNA clone IMAGE:1498384 embryo 3' read Protein similarityPolyadenylation signal
  AA103470 cDNA clone IMAGE:554667 embryo 5' read Protein similarity
  AA120423 cDNA clone IMAGE:537471 embryo 5' read Protein similarity
  BG519083 cDNA clone IMAGE:3481923 tumor, gross tissue 5' read Protein similarity
  AA388924 cDNA clone IMAGE:569426 embryo 5' read Protein similarityPolyadenylation signal
  AA162873 cDNA clone IMAGE:598967 spleen 5' read Protein similarity
  AA245647 cDNA clone IMAGE:678894 liver 5' read Protein similarity
  AA268885 cDNA clone IMAGE:734263 embryo 5' read Protein similarity
  AA511826 cDNA clone IMAGE:865807 embryo 5' read Protein similarity
  AA473637 cDNA clone IMAGE:866098 embryo 5' read Protein similarity
  AU044099 cDNA clone J0914H08 3' read Protein similarityPolyadenylation signal
  BE335192 cDNA clone IMAGE:2650822 tumor, metastatic to mammary 3' read Protein similarityPolyadenylation signal
  BE336342 cDNA clone IMAGE:3481923 tumor, gross tissue 5' read Protein similarity
  AW214803 cDNA clone IMAGE:2650822 tumor, metastatic to mammary 5' read Protein similarity
  AV287958 cDNA clone 5033401O11 ovary and uterus
  BG919609 cDNA clone IMAGE:4952198 infiltrating ductal carcinoma 5' read
  AW542377 cDNA clone C0156H01 3' read Polyadenylation signal
  AV288048 cDNA clone 5033403D22 ovary and uterus
  AV288486 cDNA clone 5033411H16 ovary and uterus
  AW557017 cDNA clone L0276C08 3' read Polyadenylation signal

SENSE ESTs

  BG146822 cDNA clone IMAGE:3978073 nk cells (flow-sorted) 3' read Polyadenylation signal
  BB509176 cDNA clone D730023C19 mammary gland
  BB511817 cDNA clone D730035M06 mammary gland
  BF148170 cDNA clone IMAGE:3657433 spermatocytes, pooled from multiple mice 3' read Polyadenylation signal
  AW108328 cDNA clone IMAGE:2235931 kidney 3' read
  AW556557 cDNA clone L0270B05 3' read Polyadenylation signal
  BI989063 cDNA clone (no-name) neural retina
  BI079385 cDNA clone IMAGE:5005505 tumor, biopsy sample 5' read Protein similarity
  BF147184 cDNA clone IMAGE:3657385 spermatocytes, pooled from multiple mice 5' read Protein similarity
  W65666 cDNA clone IMAGE:387095 embryo 5' read Protein similarity
  AA058149 cDNA clone IMAGE:480255 embryo 5' read Protein similarity
  BI106793 cDNA clone IMAGE:5035904 spontaneous tumor, metastatic to mammary. stem cell origin. 5' read Protein similarity
  BF235403 cDNA clone IMAGE:4160520 liver 5' read Protein similarity
  BI083761 cDNA clone IMAGE:5010432 tumor, biopsy sample 5' read Protein similarity
  BF120183 cDNA clone IMAGE:3985822 tumor, gross tissue 5' read Protein similarity
  BI658656 cDNA clone IMAGE:5328074 tumor, gross tissue 5' read Protein similarity
  BG146584 cDNA clone IMAGE:3978073 nk cells (flow-sorted) 5' read Protein similarity
  AW106527 cDNA clone IMAGE:2235931 kidney 5' read Protein similarity
  BI687397 cDNA clone IMAGE:5354788 infiltrating ductal carcinoma 5' read Protein similarity
  BG862442 cDNA clone IMAGE:4917137 tumor, gross tissue 5' read Protein similarity
  BG969797 cDNA clone IMAGE:4973258 kidney 5' read Protein similarity
  BF164860 cDNA clone IMAGE:4019515 spontaneous tumor, metastatic to mammary. stem cell origin. 5' read Protein similarity
  BG977050 cDNA clone IMAGE:4976874 infiltrating ductal carcinoma 5' read Protein similarity
  BI685640 cDNA clone IMAGE:5344862 infiltrating ductal carcinoma 5' read Protein similarity
  BB850878 cDNA clone F930109L24 inner ear 5' read
  BB850950 cDNA clone F930110C16 inner ear 5' read
  BB848959 cDNA clone F930005I21 inner ear 5' read
  BI331220 cDNA clone IMAGE:5138106 liver 5' read
  BB849733 cDNA clone F930102K05 inner ear 5' read