Computational Discovery of Overlapping Transcriptional Units in the Human & Mouse Genomes

Candidate UniGene cluster:UniGene Cluster Mm.183041
Description:RIKEN cDNA 1810047J07 gene
Best-Of-UniGene (BOU) SequenceNM_025910
Genomic Coordiantes Displayed:Bases 75453 to 189910 of contig GA_x5J8B7W3527
BOU Orientation Along Contig:LEFT-TO-RIGHT with respect to contig
Link to JPEG of genomic mappingMm.183041.jpeg
Best sense EST/protein match:BF787106 matched ref|NP_080186.1| (NM_025910) RIKEN cDNA 1810047J07 [Mus musculus] (E = e-115)
Best antisense EST/protein match:No protein match with an e-value of less than 1e-10


This page provides information on exon-intron structure, mouse-human homologies, polyA signals & locations, and protein homologies of ESTs from directionally-cloned libraries that are members of a UniGene cluster that is a candidate for containing ESTs derived from distinct, overlapping sense & antisense transcripts.
The upper portion of the graph is reserved for the exon-intron mappings of ESTs oriented consistently with the Best-Of-UniGene (BOU) sequence (in gold). The lower portion of the graph is reserved for the exon-intron mappings of ESTs oriented opposite the BOU sequence (in white). Dividing these portions are the exon-intron mapping of the BOU sequence itself (in blue and green). Immedietely below the BOU are HUMMUS-defined streches of sequences highly conserved between mouse and human. The height of each bar is reflective of the % identity of human-mouse homology over a 100 base-pair window centered at a given base. At the left of the graph, the GenBank accession number of the BOU or EST sequence represented along that Y-axis position is listed, along with the UniLib identification number of the library from which that EST was derived.Below the graph, the GenBank accession numbers of each of the sense & antisense ESTs are provided, along with information on which have polyA signals and protein homologies, as determined by the NCBI.

Below are listed the same set of ESTs as is depicted above, with information of read direction, tissue type, protein similarity (P), and poly-adenylation signal (A).

ANTISENSE ESTs
  AW214530 cDNA clone IMAGE:2645953 spontaneous tumor, metastatic to mammary. stem cell origin. 3' read Polyadenylation signal
  AV284797 cDNA clone 5031404N19 ovary and uterus
  AV287205 cDNA clone 5031432D22 ovary and uterus
  BE533411 cDNA clone IMAGE:3595536 infiltrating ductal carcinoma 5' read
  BF018986 cDNA clone IMAGE:3656696 spermatocytes, pooled from multiple mice 3' read Polyadenylation signal
  BG070573 cDNA clone H3088G10 3' read Polyadenylation signal
  AU016425 cDNA clone J0724H07 embryo 3' read Polyadenylation signal
  BB509088 cDNA clone D730022H20 mammary gland
  BG297149 cDNA clone IMAGE:4506872 retina 5' read
  BB505162 cDNA clone D730001K19 mammary gland
  BG083568 cDNA clone H3088G10 5' read
  AA670637 cDNA clone IMAGE:963093 mammary gland 5' read
  BF013288 cDNA clone IMAGE:3656696 spermatocytes, pooled from multiple mice 5' read

SENSE ESTs

  BB622995 cDNA clone 6430628B13 olfactory brain 5' read Protein similarity
  AW611153 cDNA clone IMAGE:2536951 kidney 5' read Protein similarity
  BF783203 cDNA clone IMAGE:4237541 kidney 5' read
  BF787106 cDNA clone IMAGE:4236994 kidney 5' read Protein similarity
  BF149980 cDNA clone IMAGE:3665865 tumor, gross tissue 5' read Protein similarity
  BE376006 cDNA clone IMAGE:3593362 tumor, biopsy sample 5' read Protein similarity
  BI647281 cDNA clone IMAGE:5319793 tumor, gross tissue 5' read
  W50630 cDNA clone IMAGE:355958 embryo 5' read
  BG921220 cDNA clone IMAGE:4954329 infiltrating ductal carcinoma 5' read
  AA591803 cDNA clone IMAGE:907087 embryo 5' read
  AI604082 cDNA clone IMAGE:619576 spleen 5' read
  AA172681 cDNA clone IMAGE:619576 spleen 5' read
  BI499133 cDNA clone (no-name) pancreas 5' read
  AA919219 cDNA clone IMAGE:1314754 mammary gland 5' read
  AW210748 cDNA clone IMAGE:2286105 kidney 3' read
  AA833077 cDNA clone IMAGE:1433344 uterus 5' read
  AW319743 cDNA clone IMAGE:2373150 kidney 3' read Protein similarity
  AA467267 cDNA clone IMAGE:834934 embryo 5' read
  AA590476 cDNA clone IMAGE:991124 embryo 5' read