Computational Discovery of Overlapping Transcriptional Units in the Human & Mouse Genomes

Candidate UniGene cluster:UniGene Cluster Mm.28794
Description:RIKEN cDNA 1810046J19 gene
Best-Of-UniGene (BOU) SequenceNM_025559
Genomic Coordiantes Displayed:Bases 2700523 to 2704376 of contig GA_x5J8B7W82RK
BOU Orientation Along Contig:RIGHT-TO-LEFT with respect to contig
Link to JPEG of genomic mappingMm.28794.jpeg
Best sense EST/protein match:AA717407 matched ref|NP_079835.1| (NM_025559) RIKEN cDNA 1810046J19 [Mus musculus] (E = 4e-61)
Best antisense EST/protein match:No protein match with an e-value of less than 1e-10


This page provides information on exon-intron structure, mouse-human homologies, polyA signals & locations, and protein homologies of ESTs from directionally-cloned libraries that are members of a UniGene cluster that is a candidate for containing ESTs derived from distinct, overlapping sense & antisense transcripts.
The upper portion of the graph is reserved for the exon-intron mappings of ESTs oriented consistently with the Best-Of-UniGene (BOU) sequence (in gold). The lower portion of the graph is reserved for the exon-intron mappings of ESTs oriented opposite the BOU sequence (in white). Dividing these portions are the exon-intron mapping of the BOU sequence itself (in blue and green). Immedietely below the BOU are HUMMUS-defined streches of sequences highly conserved between mouse and human. The height of each bar is reflective of the % identity of human-mouse homology over a 100 base-pair window centered at a given base. At the left of the graph, the GenBank accession number of the BOU or EST sequence represented along that Y-axis position is listed, along with the UniLib identification number of the library from which that EST was derived.Below the graph, the GenBank accession numbers of each of the sense & antisense ESTs are provided, along with information on which have polyA signals and protein homologies, as determined by the NCBI.

Below are listed the same set of ESTs as is depicted above, with information of read direction, tissue type, protein similarity (P), and poly-adenylation signal (A).

ANTISENSE ESTs
  AW741240 cDNA clone IMAGE:3153914 tumor, gross tissue 3' read
  BI155038 cDNA clone IMAGE:5032454 tumor, gross tissue 5' read
  BF538036 cDNA clone IMAGE:4188789 salivary gland 5' read
  BI107830 cDNA clone IMAGE:5031518 tumor, gross tissue 5' read
  BF140066 cDNA clone IMAGE:4014026 tumor, metastatic to mammary 5' read
  BI557326 cDNA clone IMAGE:5291096 tumor, gross tissue 5' read
  BI651638 cDNA clone IMAGE:5338487 tumor, gross tissue 5' read
  BI156098 cDNA clone IMAGE:5033102 tumor, gross tissue 5' read
  BI554914 cDNA clone IMAGE:5289315 tumor, gross tissue 5' read
  BI652995 cDNA clone IMAGE:5340256 tumor, gross tissue 5' read
  BB609667 cDNA clone 1110035E08 5' read
  BI155688 cDNA clone IMAGE:5033768 tumor, gross tissue 5' read
  BI645894 cDNA clone IMAGE:5315870 tumor, gross tissue 5' read
  BI647657 cDNA clone IMAGE:5319350 tumor, gross tissue 5' read
  BI108279 cDNA clone IMAGE:5032152 tumor, gross tissue 5' read
  AW211491 cDNA clone IMAGE:2648973 tumor, gross tissue 5' read
  BI650383 cDNA clone IMAGE:5336763 tumor, gross tissue 5' read
  BI652193 cDNA clone IMAGE:5339667 tumor, gross tissue 5' read
  BI649057 cDNA clone IMAGE:5317856 tumor, gross tissue 5' read
  BI555768 cDNA clone IMAGE:5291172 tumor, gross tissue 5' read
  AW212050 cDNA clone IMAGE:2648973 tumor, gross tissue 3' read

SENSE ESTs

  BG085161 cDNA clone H3109C09 5' read Polyadenylation signal
  BI101828 cDNA clone IMAGE:5040858 kidney 5' read Polyadenylation signal
  AA624583 cDNA clone IMAGE:1038464 embryo 5' read
  AA466949 cDNA clone IMAGE:835288 embryo 5' read
  AW109830 cDNA clone MT1262 liver 3' read Polyadenylation signal
  AA688457 cDNA clone IMAGE:1105954 colon 5' read
  AI747196 cDNA clone IMAGE:2076653 embryo 3' read
  AA710473 cDNA clone IMAGE:1166146 colon 5' read
  AA014363 cDNA clone IMAGE:468316 embryo 5' read
  BF233588 cDNA clone IMAGE:4159727 liver 5' read Polyadenylation signal
  AA674857 cDNA clone IMAGE:1105819 colon 5' read
  BG072328 cDNA clone H3109C09 3' read Polyadenylation signal
  AA255043 cDNA clone IMAGE:720209 liver 5' read
  AA870508 cDNA clone IMAGE:1095018 5' read
  AA397031 cDNA clone IMAGE:693372 liver 5' read
  AA717407 cDNA clone IMAGE:1178995 mammary gland 5' read
  BF123905 cDNA clone IMAGE:4023981 tumor, gross tissue 5' read
  AA689097 cDNA clone IMAGE:1137077 colon 5' read
  AA637833 cDNA clone IMAGE:1121342 muscle 5' read
  BF540438 cDNA clone IMAGE:4191960 salivary gland 5' read Polyadenylation signal
  AI155629 cDNA clone IMAGE:1479197 uterus 5' read
  AA798838 cDNA clone IMAGE:1245758 mammary gland 5' read
  AU042273 cDNA clone J1016E08 3' read Polyadenylation signal
  BI110126 cDNA clone IMAGE:5028845 tumor, gross tissue 5' read Polyadenylation signal
  AA003535 cDNA clone IMAGE:437218 embryo 5' read
  BI221540 cDNA clone IMAGE:5100534 liver 5' read
  BI221564 cDNA clone IMAGE:5100542 liver 5' read
  D77062 cDNA clone 94D07 embryonal carcinoma
  W44022 cDNA clone IMAGE:354094 embryo 5' read
  W62606 cDNA clone IMAGE:372578 embryo 5' read
  W64613 cDNA clone IMAGE:373720 embryo 5' read
  BB564478 cDNA clone 2010014H07 small intestine 5' read
  AA242707 cDNA clone IMAGE:671943 embryo 5' read
  AI450709 cDNA clone IMAGE:617576 spleen 3' read
  AA174874 cDNA clone IMAGE:617576 spleen 5' read
  AI639740 cDNA clone IMAGE:617576 spleen 5' read