Motif discovery exercise

  1. Choose a set of potentially coregulated genes in E. coli from the E. coli ORF table. If you don't have a favorite set of genes, you can copy one of the following lists of genes:

  2. Extract upstream sequences of these genes

  3. Run AlignACE

  4. Analyze the motifs found by AlignACE

Abigail Manson McGuire
Harvard Medical School
Genetics Dept., Church Lab
Alpert Bldg. 512
200 Longwood Ave.
Boston, MA. 02115
Phone: (617) 432-0503
Fax: (617) 432-7266