Biophysics 101 Genomics and Computational Biology

Tue Sep 19 DNA 1: Life & computers; comparative genomics, databases; model utility

Tue Sep 26 DNA 2: Polymorphisms, populations, statistics, pharmacogenomics

Tue Oct 03 DNA 3: Dynamic programming, Blast, Multi-alignment, HiddenMarkovModels

Tue Oct 10 RNA 1: Microarrays, library sequencing & quantitation concepts

Tue Oct 17 RNA 2: Clustering by gene or condition & other regulon data

Tue Oct 24 RNA 3: Nucleic acid motifs; the nature of biological "proofs".

Tue Oct 31 Protein 1: 3D structural genomics, homology, dynamics, function &drug design

Tue Nov 07 Protein 2: Mass spectrometry, post-synthetic modifications,

Tue Nov 14 Protein 3: Quantitation of proteins, metabolites, & interactions

Tue Nov 21 Network 1: Metabolic kinetic & flux balance optimization methods

Tue Nov 28 Network 2: Molecular computing,self-assembly,genetic algorithms,neural nets

Tue Dec 05 Network 3: Cellular, developmental, social, ecological & commercial models

Tue Dec 12 Team Project presentations

Tue Dec 19 Project Presentations

Tue Jan 02 Project Presentations

Tue Jan 09 Project follow-up & course synthesis

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