massspec/experiment.h File Reference

A Documented file. More...

#include "mqscanheader.h"
#include "byte.h"

Go to the source code of this file.

Data Structures
struct	Experiment
	LC/MS Experiment. More...
Defines
#define	SCAN_MS1   0x00000001
#define	SCAN_MS2   0x00000002
#define	SCAN_MS3   0x00000004
#define	SCAN_MS4   0x00000008
#define	SCAN_PROFILE   0x00000100
#define	SCAN_CENTROID   0x00000200
#define	SCAN_FULL   0x00010000
#define	SCAN_ZOOM   0x00020000
#define	SCAN_ALL   0xFFFFFFFF
#define	MAX_NO_EXPERIMENTS   5
Typedefs
typedef Experiment	Experiment
Enumerations
enum	{ ABS_TO_REL, REL_TO_ABS }
enum	{ D1, D2 }
enum	{ PROFILE, CENTROID, PROFILE_ZERO_PADDING }
enum	{ EXPERIMENT_FILE_FORMAT_MQ_XML, EXPERIMENT_FILE_FORMAT_OPEN_RAW, EXPERIMENT_FILE_FORMAT_MZ_XML }
enum	{ MQ_REL, MQ_ABS }
Functions
char *	ScanType_toString (int type)
void	Experiment_destroy (Experiment *exp)
	Opens a file descriptor.
int	Experiment_isScanFull (Experiment *expmnt, int scanno)
int	Experiment_isScanZoom (Experiment *expmnt, int scanno)
int	Experiment_isScanMS (Experiment *expmnt, int scanno)
int	Experiment_isScanMS2 (Experiment *expmnt, int scanno)
int	Experiment_isScanCentroid (Experiment *expmnt, int scanno)
int	Experiment_isScanProfile (Experiment *expmnt, int scanno)
int	Experiment_isScanProfileUncompressed (Experiment *expmnt, int scanno)
int	Experiment_isScanProfileCompressed (Experiment *expmnt, int scanno)
Experiment *	Experiment_getPointer (char *szExperiment)
void	Experiment_setStrings (Experiment *expmnt, char *szExpName)
int	Experiment_verifyInstrumentMethod (Experiment *experiment)
void	Experiment_createRawFolder (Experiment *exp)
void	Experiment_createProcFolder (Experiment *expmnt)
void	Experiment_createProcMapsFolder (Experiment *exp)
void	Experiment_createProcResultsFolder (Experiment *exp)
char *	Experiment_createCmpFolder (Experiment *expmnt_1, Experiment *expmnt_2)
float	Experiment_getRTFromScan (Experiment *expmnt, int scanNumber)
int	Experiment_getScanFromRT (Experiment *expmnt, float RT)
float	Experiment_calcMeanRTSamplingTime (Experiment *expmnt)
void	Experiment_createGlobalMSSamplingArray (Experiment *exp, float binSize, float moz_start, float moz_stop)
void	Experiment_saveGlobalMSSamplingArray (Experiment *expmnt)
float *	Experiment_getRTSamplingArray (Experiment *expmnt)
float *	Experiment_copyRTSamplingArray (Experiment *expmnt, int scan_start, int scan_stop, int *size)
int *	Experiment_copySCSamplingArray (Experiment *expmnt, int scan_start, int scan_stop, int *size)
float	Experiment_getMOZFromMassBin (Experiment *expmnt, int binNumber)
int	Experiment_getMassBinFromMOZ (Experiment *expmnt, float MOZ)
int	Experiment_getSizeGlobalMSSamplingArray (Experiment *exp, float binSize, float moz_start, float moz_stop)
Insets4f	Experiment_getRealInsets (Experiment *expmnt, Insets4i *samplingInsets)
void	Experiment_getRangeOfIndependentScan (Experiment *experiment, double *mass_start, double *mass_stop)
int	Experiment_getParentMSScan (Experiment *expmnt, int nScanNumber)
int	Experiment_isCentroidOnly (Experiment *expmnt)
int	Experiment_countScans (Experiment *expmnt, int type_bits)
int	Experiment_countScansWithinLimits (Experiment *expmnt, int scan_start, int scan_stop, int type)
int	Experiment_getMapTileIndex (Experiment *expmnt, int x, int y)
void	Experiment_fprintMS2ScansAsTabDelimitedTable (FILE *fp, Experiment *expmnt)
void	Experiment_fprintMZRuler (FILE *fp, Experiment *expmnt)
Variables
char	SCAN_TYPE_STRING [3][50]
int	EXPERIMENT_FILE_FORMAT_TYPE
Experiment	EXPERIMENTS_LOADED [MAX_NO_EXPERIMENTS]
int	CURR_NO_EXPERIMENTS
int(*	Experiment_init )(Experiment *expmnt, char *szExperiment)
	Initializes Experiment.
int(*	Experiment_loadMS2MQScanHeaderArray )(Experiment *expmnt)
float *(*	Experiment_getTIC )(Experiment *expmnt, int *nTIC)
int(*	Experiment_createMS2Table )(Experiment *expmnt)

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Detailed Description

A Documented file.

Author:

Kyriacos C. Leptos

Date:

2004-05-04

Details.

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Function Documentation

void Experiment_destroy (  Experiment *  expmnt  )

Opens a file descriptor. Parameters: exp  an Experiment* argument. szExpName  a char* argument

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Variable Documentation

int Experiment_init

Initializes Experiment. Initializes the structure Experiment Parameters: exp  an Experiment* argument. szExpName  a char* argument

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