massspec/map_io.h File Reference

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Enumerations
enum	{ MAP2D_MS_SCANS_ONLY, MAP2D_ALL_SCANS }
enum	{ MAP2D_DATA_TEXT, MAP2D_DATA_BINARY }
Functions
char *	Map2D_getFullHeaderName (Experiment *expmnt, char *szSession, char *type)
char *	Map2D_getFullDataName (Experiment *expmnt, char *szSession, char *type)
int	updateRawMapIndex (Experiment exp, char *szNewMapname)
char *	Map2D_rAssembleDirectory (Experiment *expmnt, char *szMapname)
char *	Map2D_pAssembleDirectory (Experiment *expmnt, char *szMapname)
void	createDirectoryForRawMap (Experiment exp, char *szMapname)
void	createDirectoryForProcMap (Experiment exp, char *szMapname)
Rectangle4i	Map2D_aLoadBorders (char *szFullname)
Rectangle4i	Map2D_sLoadBorders (Experiment *expmnt, char *szSession)
char *	Map2D_sLoadProcScriptName (Experiment *expmnt, char *szSession)
int	Map2D_aLoadHeader (Map2D *map, char *szMap2DHeaderFilename)
int	Map2D_sLoadHeader (Map2D *map, Experiment *expmnt, char *szSessionName)
int	Map2D_snLoadHeader (Map2D *map, Experiment *expmnt, char *szSessionName, char *name)
int	Map2D_sntLoadHeader (Map2D *map, Experiment *expmnt, char *szSessionName, char *tile_flag, char *type_flag)
int	auxLoadMap2DAbundanceSubMatrixAtIndex (char *szMapFilename, Rectangle4i filerect, Rectangle4i subrect, Map2D *MAP, int rt_i, int mz_j)
int	auxLoadMap2DAbundanceMatrix (char *szMapFilename, Map2D *MAP)
int	auxLoadMap2DAbundanceSubMatrix (char *szMapFilename, Rectangle4i filerect, Rectangle4i subrect, Map2D *MAP)
int	Map2D_load (Map2D *map, char *szMap2D)
int	Map2D_aLoad (Map2D *map, char *filename)
int	Map2D_pLoad (Map2D *map, char *szPath, char *szName)
int	Map2D_ptLoad (Map2D *map, char *szPath, char *szName, char *szType)
int	Map2D_snLoad (Map2D *map, Experiment *expmnt, char *szSession, char *szType)
int	Map2D_sntLoad (Map2D *map, Experiment *expmnt, char *session, char *name, char *tile)
int	Map2D_loadMultiple (char *filename, char *tile_flag, Map2D *map)
int	Map2D_loadFromFolder (char *filename, int flag, Map2D *map)
int	Map2D_tLoad (Map2D *map, char *filename, char *flag)
int	Map2D_loadFromMQXML (Map2D *map, Experiment *expmnt, Rectangle4i *subrect)
int	Map2D_loadFromOpenRawMSArchive (Map2D *map, Experiment *expmnt, Rectangle4i *subrect)
int	Map2D_loadFromMSArchiveWithMargins (Map2D *map, Experiment *expmnt, int margin_length)
int	Map2D_aSaveHeader (Map2D *map, char *szMap2DHeaderFilename)
int	auxSaveMap2DAbundanceMatrix (char *szMapFilename, Map2D *MAP)
int	fpackFloatMatrix (FILE *fp, float **matrix, int r1, int r2, int c1, int c2)
int	Map2D_aSave (Map2D *map, char *szMapFilename)
int	Map2D_snSave (Map2D *map, Experiment *expmnt, char *szSession, char *szType)
void	Map2D_pfSave (Map2D *map, char *szPath, char *szFilename)
int	Map2D_saveAbundanceMatrix (Map2D *map, char *szMapFilename)
int	Map2D_saveMultiple (Map2D *map, char *szMap2D, char *tile_flag)
void	Map2D_saveInFolder (char *szMap2D, int flag, Map2D *map)
int	Map2D_sntSave (Map2D *map, Experiment *expmnt, char *session, char *name, char *tile)
int	Map2D_sntClean (Experiment *expmnt, char *session, char *name, char *tile)
int	Map2D_aRemove (char *filename)
int	Map2D_snRemove (Experiment *expmnt, char *session, char *name)
int	Map2D_sntRemove (Experiment *expmnt, char *session, char *name, char *tile)
Variables
int	MAP2D_SCAN_MODE
int	MAP2D_DATA_TYPE
int(*	Map2D_loadFromRawFile )(Map2D *map, Experiment *expmnt, Rectangle4i *subrect)

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Detailed Description

Author:

Kyriacos C. Leptos

Date:

2004-05-04

A file that has the definitions of function to load and save Map2D

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Function Documentation

int Map2D_aLoadHeader (  Map2D *  map, char *  szMap2DHeaderFilename )

Parameters: map  the map to be loaded Returns: returns 1 if successful 0 otherwise

int Map2D_snLoadHeader (  Map2D *  map, Experiment *  expmnt, char *  szSessionName, char *  name )

When calculating statistics of a map if the map is representing a segment then not all of its points are members of the map, so the statistics will be skewed Parameters: map  the map to be loaded Returns: returns a structure of Descriptive Statistics

int Map2D_sntLoadHeader (  Map2D *  map, Experiment *  expmnt, char *  session, char *  name, char *  tile )

When calculating statistics of a map if the map is representing a segment then not all of its points are members of the map, so the statistics will be skewed Parameters: map  the map to be loaded Returns: returns a structure of Descriptive Statistics

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