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An XML-Based File Format for Proteomic Mass Spectrometry Data

The rawXML file format for proteomic mass spectrometry data was developed in the Church laboratory and it was described in the following article:

Leptos, KC, Nguyen, DH, Andrews, LJ, Scanlon, EL, Church,GM (2007), rawXML: An XML-Based File Format for Proteomic Liquid Chromatography/Mass Spectrometry (LC/MS) Data. (to be submitted)

The rawXML file format

UML version of the rawXML schema
XML version of the rawXML schema
Performance

Software

native2rawxml, a native (Finnigan, QStar) converter to rawXML: [binaries] [source]
librawxml, an ANSI C rawXML parser: [source]

Sample Data

Mycoplasma pneumoniae [XRAW] [rawXML]
HeLa cells [XRAW] [rawXML]
BSA-1 [XRAW] [rawXML]
Saccharomyces cerevisiae [XRAW] [rawXML]
BSA-2 [XRAW] [hmsXML]