Measuring 3D protein family relationships

3D to 3D comparsions:

CATH Class, Architecture, Topology & Homology (UCI)

CE Combinatorial Extension of the optimal path (RCSB)

FSSP Fold class by Structure-Structure alignment of Proteins (EBI)

SCOP Structural Classification Of Proteins (MRC)

VAST Vector Alignment Search Tool (NCBI)

3D to sequence: "Threading"

ref

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