Apr 02 Mon
Barak Cohen
Apr 05 Thu
Dan Janse Conditional Protein Knockouts
Apr 06 Fri*** Ann Schwass,Lucent
Technologies-"Estimating Dynamic Timing Patterns for Real-Time Phone Fraud
Detection" (Job Talk for Roth Lab)2PM in the 5th Fl WAB Library
Apr 09 Mon
Yongxing Liu (Guest Speaker) "STUDIES OF DNA AND PROTEIN STRUCTURE PREDICTION
FROM SEQUENCE: DATA MINING AND MOLECULARMECHANICS METHODS".
Apr 12 Thu
Doug Selinger/Adnan Derti "..gaprepeatgapenegoduespgaprepeat..(the human
genome)
Apr 16 Mon
No Lab Meeting
Apr 17 Tue***Biochemical
Networks discussion meeting (11:30AM-1:30PM) Seeley Mudd 304A
Apr 19 Thu
No Lab Meeting
Apr 23 Mon
No Lab Meeting
Apr 26 Thu
David Miller (Guest Speaker, Fritz Roth host)"Evidence-confidence calculation
for reliable detection of alternative splices in expressed sequence data"
Apr 30 Mon
Anders Bergkvist "Bioinformatic 2001 Conference Summary"
May 03 Thu
Martha Bulyk "Transcription Factor Binding to Intergenic
Microarrays"
May 07 Mon
Nathan Walsh (Guest Speaker) "PDZ Domains in the Bacterial Periplasmic
Stress Respone Pathway"
May 10 Thu
Nobuhisa Masuda
May 14 Mon
Jay Shendure "Of mice & men"
May 17 Thu
No Lab Meeting
May 21 Mon
Sung Choe
May 24 Thu
No Lab Meeting
May 28 Mon
No Lab Meeting (Memorial Day)
May 31 Thu
No Lab Meeting (Genetics Retreat)
Jun 04 Mon
Vasudeo Badarinarayana "Whole genome transposon quantitation"
Jun 07 Thu
Daniel Segre'
Jun 25 Mon
Debra Goldberg,(Guest Speaker-Roth Lab)"Algorithms for constructing comparative
maps of chromosomes".
Jun 28 Thu
No Lab Meeting
Jul 02 Mon
Kazuyuki Yanai Improved Yeast One-hybrid technology
Jul 05 Thu
Patrik D'haeseleer Information theory
Jul 09 Mon 1 PM
Reinhart Heinrich (Guest Speaker) Cell oscillations and signal transduction
modeling
Jul 09 Mon 4 PM
Doron Lancet (Guest Speaker) Olfactory receptor genomics
Jul 12 Thu
Werner G. Krebs (Guest Speaker)"The Macromolecular Motions Database:
a standardized system
for analyzing and visualizing macromolecular motions in a database framework".
Jul 16 Mon
Robert Hess (Guest Speaker) Massively Parallel Synthesis and
Screening (Biotrove
Jul 19 Thu
Jake Jaffe Mycoplasmal motility & mammalian nuclear protein mass-spec
Jul 23 Mon
Kyriacos Leptos Mass spec quantitation
Jul 26 Thu
Dan Janse yeast knockout combinations
Jul 30 Mon
Zhou Zhu DNA motif timing
Aug 02 Thu
Rob Mitra Polony sequencing & haplotyping
Aug 06 Mon
Patrik D'haeseleer
Aug 09 Thu
Tzachi Pilpel
Aug 13 Mon*** Ross Overbeek
- MEC room 227 1:00 - 2:00
Aug 16 Thu
Matt Kaeberlein (Guest Speaker)"Genetic Analysis of Longevity in
Saccharomyces cerevisiae".
Aug 20 Mon
Wayne Rindone Mammalian expression database issues
Aug 23 Thu
No Lab Meeting
Aug 27 Mon
Fritz Roth/Frank Gibbons - ISMB conference overview
Aug 30 Thu
No Lab Meeting
Sep 03 Mon
Labor Day no lab meeting
Sep 06 Thu
No Lab Meeting
Sep 10 Mon
Joel Voldman
Sep 13 Thu
Yonatan Grad & John Aach - Metazoan mRNA hairpins.
Sep 17 Mon
No Lab Meeting
Sep 20 Thu
Peter Kharchenko Stochastic modeling
Sep 24 Mon
Nikos Reppas Homology-based Genome (& Proteome) engineering.
Sep 27 Thu
Allegra Petti
Oct 01 Mon
Vasudeo Badarinarayana & nsbp; Whole genome selection quantitation
Oct 04 Thu
Nobuhisa Masuda
Oct 08 Mon
No Lab Meeting (Columbus Day)
Oct 11 Thu
Dirk Holste (Guest Speaker) "Correlations, coding potentials, and gene
expression profiles".
Oct 15 Mon
Kazuyuki Yanai
Oct 18 Thu
Sung Choe
Oct 22 Mon
Daniel Segre
Oct 25 Thu
Jake Jaffe
Oct 29 Mon
Jay Shendure
Nov 01 Thu
Rob Mitra
Nov 05 Mon
Zhou Zhu
Nov 08 Thu
Martin Steffen Signal transduction and protein interactions
Nov 12 Mon
Dan Janse
Nov 15 Thu
Doug Selinger
Nov 19 Mon
Patrik D'haeasleer
Nov 22 Thu
No Lab meeting
Nov 26 Mon
Matthew Wright
Nov 29 Thu
Aimee Dudley
Dec 03 Mon
Wayne Rindone
Dec 06 Thu
Karyiacos Leptos
Dec 10 Mon
Barak Cohen
Dec 13 Thu
Yonatan Grad
Dec 17 Mon
Martin Steffen
Dec 20 Thu
Tzachi Pilpel
Dec 24 Mon
No Lab Meeting Christmas Break
Dec 27 Thu
No Lab Meeting Christmas Break
Dec 31 Mon
No Lab Meeting
Jan 03 Thu
Vasudeo Badarinarayna
Jan 07 Mon
Jingdon Tain
Jan 10 Thu
Allegra Petti
Jan 14 Mon
Jay Shendure
Jan 17 Thu
Dennis Vitkup
Jan 21 Mon
Nobuhisa Masuda
Jan 24 Thu
John Aach
Jan 28 Mon
Kazuyuki Yanai
Jan 31 Thu
No Lab Meeting
Jan 04 Mon
George Church
Jan 07 Thu
Sung Choe
Jan 11 Mon
Daniel Segre
Jan 14 Thu
Jake Jaffe
Jan 18 Mon
Jay Shendure
13 Oct, 1999 Gary
Siuzdak, Scripps Research Institute (Mass Spectrometry talk)
***21 Oct, 1999
Peter James, Swiss Federal Inst. of Tech. " Tools for Proteome Analysis.
Development and Application to Defining Gene-Function Relationships and
Mapping of Protein-Protein Interactions" (Mass Spec talk -presentation
@ 4:00 Goldenson Bulding, Room 122)
***27 Oct, 1999
Steve Gygi, Univ. Washington " Measuring gene expression at the proteome
Level"(Mass Spectrometry talk @ 4:00 Mudd Building, Room 502)
10 Nov, 1999 Eric
Selker, U. Oregon, repeat-induced-point mutations (Ting)
8 Dec, 1999
Minx Fuller, Stanford, fly germ cells (Cliff)
9 Feb, 2000
Charles Sherr, Memphis TN, Cancer (Phil)
8 Mar, 2000
Greg Gloor, U. W. Ontario, fly gene conversion, (Ting)
12 Apr, 2000 Bonny
Brewer, U. of Washington, yeast replication (Fred)
10 May, 2000 Eric
Olson, Dallas, vertebrate development, (postdocs Benoit Bruneau, Richard
Pierce)
11 Oct, 2000 Elliot
Myerowitz, Cal Tech, (Cliff)
17 Oct, 2000 Uwe
Sauer (Zurich) Metabolic Flux Analysis in Microbes: Methodologies and Applications'
10:00am Cannon Room (Tuesday) (George)
Jan 29- Feb 1, 1999 Third Annual Conference on Microbial Genomes Chantilly, Virginia (George Church)
Jul 25-30, 1999 United
Engineering Foundation, "Biochemical Engineering",
Salt Lake City, UT (George
Church)
Aug 2-4, 1999 Society for Industrial Microbiology, Arlington, VA (George Church)
Aug 17-21, 1999 New Trends in High Performance Computing,HPCU'99 SUNY Stony Brook, Long Island, NY (Tim Chen)
Sept 5-10, 1999 International
School on Bioinformatics, Magdeburg, Germany
(Abby McGuire)
Sep 7-9, 1999 First Workshop on Computational Biology: Bridging the Gap Between Sequence & Function CSHL, NY (Tim Chen)
Sep 14, 1999 at the German Embassy in Washington DC, the Smithsonian and Computerworld Magazine symposium "Gene Medicine: Using the Map." (Martha Bulyk)
Sep 18, 1999 Affymetrix User Group meeting in Miami, FL in conjunction with the TIGR 11th GSAC (Saeed Tavazoie)
Sep 22 - 25, 1999 The Microarray Meeting (Technology, Application & Analysis)Mountain Shadows Marriott Resort, Scottsdale, Arizona (Martin Steffen)
Oct 15-18, 1999 CHI Functional Genomics Conference in Boston. (Saeed Tavazoie)
Nov 10-12, 1999 Datamining for Bioinformatics - Towards In Silico Biology EBI - Wellcome Trust Genome Campus - Hinxton UK (John Aach)
Nov 13-17, 1999 7th Conference on Small Genomes The Doubletree Hotel, Arlington, Virginia, (George Church)
Jan 11, 2000 Rockefeller Univ. Symposium on Modeling Life Processes (George Church)
Jan 24 to Jan 28, 2000 Aspen regulatory network meeting (Saeed Tavazoie & Tim Chen)
Jan 27 to Feb 1, 2000 World Economic Forum Davos, Switzerland (George Church)
Feb 27 to Mar 2, 2000 DOE Contractor and Grantee Workshop Santa Fe, NM (Wayne Rindone)
Feb 28 to Mar 1, 2000 CHI 7th Annual Human Genome Project: Commercial Implications Conference. Fairmont Hotel, San Francisco, CA (Saeed Tavazoie)
Apr 3-5, 2000 MACRO RESULTS FROM MICROARRAYS: Establishing Leads for Drug Development Cambridge, MA (George Church)
Apr 8-11, 2000 Fourth Annual International Conference On Computational Molecular Biology (Recomb2000)Tokyo, Japan (Tim Chen)
May 24, 2000 World Economic Forum in Washington, DC (George Church)
May 31, 2000 NSF metabolic networks in Washington, DC (George Church)
Jun 2, 2000 Internet & Society 2000 (George Church)
Jun 4-8, 2000 ASBMB/ASPET 2000 Genomics session -- Boston, MA Hynes Convention Center (George Church)
Jun 21-22, 2000 Max Plank Inst. Microarray Workshop, Berlin (George Church)
Jul 25-30, 2000 Yeast Meeting in Seattle (Aimee Dudley, Barak Cohen)
Sep 9-13, 2000 ISMB 2000 at San Diego (Yizong Cheng & Tzachi Pilpel)
Sep 9-13, 2000 Molecular, Metabolic, and Gene Control Networks at the CRM at the Universite de Montreal. (George Church)
Nov 29, 2000 Corning Workshop on Bioinformatics (Martin Steffen).
Jan 25-30, 2001 World Economic Forum 2001 in Davos (George Church)
Feb 22, 2001 Showcase meeting: Where do we go from HUGO? at The Pierre in NYC (George Church)
Mar 13, 2001. Experiencing the Frontiers of Biomedical Technology HST Symposium, Boston, MA (George Church)
Apr 21-24, 2001 Recomb 2001 in Montreal (George Church)
May 8, 2001 CGR lecture in Cambridge, MA (George Church)
May 24, 2001 Mass. Biotech Council Science Symposium session "MINING THE GENOME", 2:45-4:30pm at the Westin Copley Place, Boston. (George Church)
June 22, 2001 DIMACS Workshop on Integration of Diverse Biological Data (Tzachi Pilpel)
Jun 13-14, 2001Armenise Symposium: Cancer Biology & Post-Genomics Grand Hotel Borromee, Lago Maggiore in Italy (George Church)
Jul 21-25, 2001 ISMB 2001 in Copenhagen, Denmark (Tzachi Pilpel)
Aug 23-26, 2001 Santa Cruz Human Genome Workshop at UCSC (George Church).
Sep 12, 2001 New England Bioinformatics Group (NEBiG) and Abbott Bioresearch Center: Microarray Data Analysis Toward Understanding Autoimmunity. Worcester, MA (George Church)
Sep 13-15, 2001 PNL, SDSC, and Sun: Computational Challenges In The Post-Genomic Age-II. Durham, NC. (George Church)
Dec 17, 2001 Biomedical Informatics Grand Rounds Mon 11 AM Children's Hospital, Boston (George Church)
Jan 31, 2001 Whitehead Institute Functional Genomics Seminar Series (George Church)
Mar 5, 2001 Center for Genomics and Bioinformatics, Indiana University (George Church)
*****************************************************************************
Friday
D/J Seminars at Noon in WAB 563
May 11/01
Rob Mitra
June 22/01
Xiaohua Huang
July 27/01
Nikos Reppas
Sep 21/01
Barak Cohen
************** NOTE TIME AND ROOM CHANGE ************
The purpose of the Church Lab journal club is to explore various topics related to functional genomics and computational biology. Suggested formats for presentations include analyses of relevant journal articles (current or historical), tutorials (software packages, web sites, statistical algorithms), brain-storming sessions on how to apply new techniques within the lab, etc.
General journal Clubs are held from 10- 11:30 am every other Friday in the Alpert 4th floor conference room. Network modeling discussions in Mudd 304A conference room.. Each week 1 person presents and another person brings food. Journal articles should be distributed 1 week in advance. Attendance is open to all.
DATE SPEAKER
FOOD TOPIC
January 14, 00 Saeed
Priya
Introduction to Clustering
January 28, 00 John
Aimee
Single Nucleotide Polymorphisms
February 11, 00 Barak
Felix
Modeling Baterial Chemotaxis
February 25, 00 Tzachi
Paula
BLAST Theory
March 10, 00 Paula
Tzachi AlignACE
March 24, 00 Aimee
Allegra Evolution
of the yeast Mitochondrial genome
April 7, 00 Abby’s
Thesis Defense
April 21, 00
--------------------------
May 5, 00 Priya
Nick
FRAP/FLIP analysis
May 26, 00 Adnan/Itai
Dan
Gene fusions in S. cerevisiae
June 9, 00 Doug
Rob
Artificial life
June 23, 00 Jeremy
Vasu
Genetic toggle switches
July 7, 00
--------------------------
July 21, 00 Tzachi
Jeremy Matlab
tutorial - I
July 28, 00 Tzachi
Priya
Matlab tutorial - II
Sept 22, 00
Nick
Aimee
Flux Ratio Analysis
Oct 20, 00 Post-doc
candidate for the Roth lab
Nov 3, 00 Cheng Li
Barak Model based analysis of oligonucleotide
DNA arrays
Nov 17, 00 Atul Butte
Novel bioinformatics techniques in functional genomics
Dec 1, 00 Jadwiga
Bienkowska
A bayesian approach to protein fold recognition
Jan 12, 01 Fri Rob
Mitra
Proteomics
Jan 26, 01 Fri WAB
4th floor conf. room Patrik
Robustness SFI
, Philip Ball.
Feb 9, 01 Fri Room
C212 Savageau's genetic regulation papers
Feb 20, 01 Tue 11:30
Mudd 304A Overview of modeling methods: Stochastic, Bayesian,...
Mar 9, 01 Fri 2:00
Room C212 Nik Metabolic Control Analysis
Mar 20, 01 Tue 11:30
Mudd 304A Metabolic (& small world) Networks
Apr 3, 01 Tue 11:30
Mudd 304A Modularity
Apr 17, 01 Tue 11:30
Mudd 304A Peter K Petri Nets
May 1, 01 Tue 11:30
Mudd 304A Stochastics II
May 15, 01 Tue 11:30
Mudd 304A Differential Equation models
May 29, 01 Tue 11:30
Mudd 304A Integrated RNA & proteomicsIdeker
Jun 12, 01 Tue 11:30
NE43-518 Alexander Hartemink Networks & Expression
Jun 26, 01 Tue 11:30
Mudd 304A Allegra Petti: Emergent properties of networks of biological
signaling pathways. Science
283: 381 (1999). Bhalla, et al.
10-Jul-2001 Tue 11:30
Mudd 304A Tzachi Pilpel: Regulatory element detection using correlation
with expression. Nature
Genet. 27, 167-171 (2001). Bussemaker, et al.
24-Jul-2001 Tue 11:30
Mudd 304A Peter & Patrik: Stochastic differential equations (&geometric
Brownian Motion)
(1)
Tomas Bjork(2)
Jan Nygaard Nielsen(3)Peter
Laurence
21-Aug-2001 Tue 11:30
Mudd 304A Peter : complex
networks by the Barabasi group
Old labmeeting lists:
Nov98-Apr99 ,
Jul99-Dec99 ,
Dec99-Aug00 ,
Jul00-Dec00 ,
Nov00-May01 ,
Apr01-Oct01 .
A
list of Genome related Meetings
Last update: 21-Sep-2001
by GMC; contact: reyes@arep.med.harvard.edu