Jan 25-30, 2001 World Economic Forum 2001 in Davos (George Church)
Feb 22, 2001 Showcase meeting: Where do we go from HUGO? at The Pierre in NYC (George Church)
Mar 13, 2001. Experiencing the Frontiers of Biomedical Technology HST Symposium, Boston, MA (George Church)
Apr 21-24, 2001 Recomb 2001 in Montreal (George Church)
May 8, 2001 CGR lecture in Cambridge, MA (George Church)
May 24, 2001 Mass. Biotech Council Science Symposium session "MINING THE GENOME", 2:45-4:30pm at the Westin Copley Place, Boston. (George Church)
June 22, 2001 DIMACS Workshop on Integration of Diverse Biological Data (Tzachi Pilpel)
Jun 13-14, 2001 Armenise Symposium: Cancer Biology & Post-Genomics Grand Hotel Borromee, Lago Maggiore in Italy (George Church)
Jul 21-25, 2001 ISMB 2001 in Copenhagen, Denmark (Tzachi Pilpel)
Aug 23-26, 2001 Santa Cruz Human Genome Workshop at UCSC (George Church).
Sep 12, 2001 New England Bioinformatics Group (NEBiG) and Abbott Bioresearch Center: Microarray Data Analysis Toward Understanding Autoimmunity. Worcester, MA (George Church)
Sep 13-15, 2001 PNL, SDSC, and Sun: Computational Challenges In The Post-Genomic Age-II. Durham, NC. (George Church)
Nov 27-Dec 1, 2001 DARPA BioCOMP meeting Monterey, CA (George Church)
Dec 1, 2001 E.coli resources meeting, Chicago, IL (Doug Selinger)
Dec 17, 2001 Biomedical Informatics Grand Rounds Mon 11 AM Children's Hospital, Boston (George Church)
Jan 27-31, 2002 DOE Genome Meeting, Santa Fe, NM (Rob Mitra & Wayne Rindone)
Jan 31, 2002 Whitehead Institute Functional Genomics Seminar Series (George Church)
Feb 12, 2002 MIT Mathematics Dept: "The challenge of integrating informational, spatial, temporal, and optimal models: toward synthetic biology.
Feb 14, 2002 BWH Clinical Pathology Conference Series: "Relating Genetic differences to Gene Expression and Cell Proliferation: Technologies and Models." (George Church)
Feb 26, 2002 Harvard Inst. Medicine Genomics Center 1st floor Conference at Noon: "Genome-wide measures and system models for protein interactions and cell proliferation." (George Church)
Feb 27, 2002 HMS Cannon Room 4:00 to 6:00 PM BBS minisymposium on Functional Genomics & Informatics (George Church, Martha Bulyk, Fritz Roth, Marc Vidal)
Mar 18-19, 2002 Gaithersburg, MD DOE Genomes to Life Mathematics Workshop (Matthew Wright)
Mar 23, 2002 E. coli Model Cell Consortium (Emc^2) meeting (Doug Selinger).
Apr 1, 2002 BU Bioinformatics Dept, "Genome systems models and measures connecting genotype with phenotype." (George Church)
May 1, 2002 at 10:50 AM Boston CHI Macro Results Through MicroArrays Keynote Presentation: "Array Quantitation for Modeling Mutations Affecting RNA, Protein Interactions, and Proliferation" (George Church)
May 22-24, 2002 Washington DC DARPA IPTO Bio-Computation PI Meeting (George Church)
Jun 4, 2002 Archemix at 11:00 AM "Polonies" (George Church).
Jun 11, 2002 Yale at 4:00 PM "Systems models and measures connecting genotype to phenotype" (George Church).
Jun 19, 2002 Harvard CGR at 3 PM. "From proteomics to a highly interconnected model of replication and selection." (George Church)
Jun 24-28, 2002 MIT 20.01s Bioinformatics: Principles, methods and applications. (George Church).
July 7-12, 2002 Vienna 14th International Organization for Mycoplasmology (IOM) Congress (Jake Jaffe)
July 23, 2002 Sequencing and resequencing the biome. Pooks Hill Bethesda Marriott (George Church)
July 26, 2002 Fri at 9:00 AM Humboldt Univ. & Boston Univ. Bioinformatics workshop in Boston. Keynote: "Biosystems Measures and Models of Reproductive Fitness" (George Church)
July 28-Aug2 GRC Genomics & Structural/Evolutionary Bioinformatics Mount Holyoke (Dennis Vitkup)
July 30-Aug 4 Yeast meeting 2002 Madison, WI (Aimee Dudley)
Aug3-6 ISMB02 & SIGSIM02 Edmonton (Matt Wright)
Sept 4, 2002 Serono (George Church).
Sept 13, 2002 DNA Microarrays in Biology and Medicine Lausanne, Switzerland (Doug Selinger)
Oct 2, 2002 Genome Sequencing and Analysis Conf. (GSAC) Boston (George Church)
Nov. 8, 2002 University of Massachusetts Boston, Genome "Systems models: Genotype to Phenotype" (George Church).
Dec 13-15, 2002 ICSB 3 Karolinska Institutet, Stockholm, Sweden (George Church).
Feb 10-12, 2003 First DOE Genomes to Life Workshop, Washington DC, (George Church)
Feb 7, 2002 Univ. of Texas Biomedical Sciences 7th Mini-Symposium, Houston. Keynote (George Church).
Feb 19, Wed, 2003 Univ. Washington, Seattle "Genomic Technology for Systems Measures & Models of Proliferative Optimality." (George Church)
May 18-22, 2003. American Society for Microbiology (ASM) Colloquim on Systems Microbiology. 4D and Optimality Models of Replicative Fitness (George Church)
*****************************************************************************
Friday
D/J Seminars at Noon in WAB 563
Oct 26/01
David Hess
Nov 30/01
Peter Kharchenko
Dec 14/01
Dennis Vitkup
Jan 11/02
Barak Cohen
Feb 08/02
Jay Shendure
Feb 15/02
Jake Jaffe
Mar 08/02
Aimee Dudley
Apr 05/02
Kyriacos Leptos
Apr 26/02
Yonaton Grad
May 03/02
Daniel Segre
May 31/02
Martin Steffen
************** NOTE TIME AND ROOM CHANGE ************
The purpose of the Church Lab journal club is to explore various topics related to functional genomics and computational biology. Suggested formats for presentations include analyses of relevant journal articles (current or historical), tutorials (software packages, web sites, statistical algorithms), brain-storming sessions on how to apply new techniques within the lab, etc.
Wednesday Network modeling journal discussions in Mudd 2nd floor conference room. Each week 1 person presents and another person brings food. Journal articles should be distributed 1 week in advance. Attendance is open to all.
DATE SPEAKER
FOOD TOPIC
January 14, 00 Saeed
Priya
Introduction to Clustering
January 28, 00 John
Aimee
Single Nucleotide Polymorphisms
February 11, 00 Barak
Felix
Modeling Baterial Chemotaxis
February 25, 00 Tzachi
Paula
BLAST Theory
March 10, 00 Paula
Tzachi AlignACE
March 24, 00 Aimee
Allegra Evolution
of the yeast Mitochondrial genome
April 7, 00 Abby’s
Thesis Defense
April 21, 00
--------------------------
May 5, 00 Priya
Nick
FRAP/FLIP analysis
May 26, 00 Adnan/Itai
Dan
Gene fusions in S. cerevisiae
June 9, 00 Doug
Rob
Artificial life
June 23, 00 Jeremy
Vasu
Genetic toggle switches
July 7, 00
--------------------------
July 21, 00 Tzachi
Jeremy Matlab
tutorial - I
July 28, 00 Tzachi
Priya
Matlab tutorial - II
Sept 22, 00
Nick
Aimee
Flux Ratio Analysis
Oct 20, 00 Post-doc
candidate for the Roth lab
Nov 3, 00 Cheng Li
Barak Model based analysis of oligonucleotide
DNA arrays
Nov 17, 00 Atul Butte
Novel bioinformatics techniques in functional genomics
Dec 1, 00 Jadwiga
Bienkowska
A bayesian approach to protein fold recognition
Jan 12, 01 Fri Rob
Mitra
Proteomics
Jan 26, 01 Fri WAB
4th floor conf. room Patrik
Robustness SFI
, Philip Ball.
Feb 9, 01 Fri Room
C212 Savageau's genetic regulation papers
Feb 20, 01 Tue 11:30
Mudd 304A Overview of modeling methods: Stochastic, Bayesian,...
Mar 9, 01 Fri 2:00
Room C212 Nik Metabolic Control Analysis
Mar 20, 01 Tue 11:30
Mudd 304A Metabolic (& small world) Networks
Apr 3, 01 Tue 11:30
Mudd 304A Modularity
Apr 17, 01 Tue 11:30
Mudd 304A Peter K Petri Nets
May 1, 01 Tue 11:30
Mudd 304A Stochastics II
May 15, 01 Tue 11:30
Mudd 304A Differential Equation models
May 29, 01 Tue 11:30
Mudd 304A Integrated RNA & proteomics Ideker
et al.
Jun 12, 01 Tue 11:30
NE43-518 Alexander Hartemink Networks & Expression
Jun 26, 01 Tue 11:30
Mudd 304A Allegra Petti: Emergent properties of networks of biological
signaling pathways. Science
283: 381 (1999). Bhalla, et al.
10-Jul-2001 Tue 11:30
Mudd 304A Tzachi Pilpel: Regulatory element detection using correlation
with expression. Nature
Genet. 27, 167-171 (2001). Bussemaker, et al.
24-Jul-2001 Tue 11:30
Mudd 304A Peter & Patrik: Stochastic differential equations (&geometric
Brownian Motion)
(1)
Tomas Bjork(2)
Jan Nygaard Nielsen(3)Peter
Laurence
21-Aug-2001 Tue 11:30
Mudd 304A Peter : complex
networks by the Barabasi group
29-Jan-2002 Tue 11:30 Mudd 304A Patrik : Reka Albert and Barabasi's review on "Statistical mechanics of complex networks" Chapter VI (small-world networks) and VII (the scale-free model)
5-Feb-2002 Tue 11:30 Mudd 304A Systematic Genetic Analysis with Ordered Arrays of Yeast Deletion Mutants Hin Yan Tong et al, Science Dec 14 2001: 2364-2368.
5-Mar-2002 Tue 11:30 AM Mudd 304A Whole-istic Biology Lisa Chong and L. Bryan Ray Science Mar 1 2002: 1661. Systems Biology: A Brief Overview Hiroaki Kitano Reverse Engineering of Biological Complexity Marie E. Csete and John C. Doyle
20-Mar-2002 Wed 10:00 AM Mudd 2nd floor conference (note new time!) A Genomic Regulatory Network for Development (Davidson et al Science 2002 ; more detailed background: Genomic Cis-Regulatory Logic (Science 1998) , Yuh et al Development
3-Apr-2002 Wed 10:00 AM Mudd 2nd floor conf: same topic as last time plus: Cis-regulatory logic in the endo16 gene: switching from a specification to a differentiation mode of control. Yuh et al (2001) Development 128 (5): 617
30-Apr-2002 Wed 10:00 AM Mudd 2nd floor conf (202): A preprint from Reka Alberts (see Patrik) and The segment polarity network is a robust developmental module. von Dassow, G. et al. Nature 406, 188-192 (2000)
15-May-2002 Wed 10:00
AM Mudd 2nd floor conf (202):
John : Topological
& causal structure of the yeast transcriptional regulatory network
N. Guelzim, S Bottani, P Bourgine & F Kepes. Nat. Gen 31:60-63.
Daniel : Network
motifs in the transcriptional regulation network of Escherichia coli
SS Shen-Orr, R Milo, S Mangan, U Alon. Nat Gen 31:64-68.
Debra : The
identification of functional modules from the genomic association of genes
Berend Snel, Peer Bork, and Martijn A. Huynen PNAS 99(9):5890-5895
Patrik : Reverse
engineering gene networks using singular value decomposition and robust
regression M. K. Stephen Yeung, Jesper Tegnr, and James J. Collins.
PNAS 99:6163-6168
Old labmeeting lists: Nov98-Apr99 , Jul99-Dec99 , Dec99-Aug00 , Jul00-Dec00, Nov00-May01, Apr01-Oct01.
A list of Genome related Meetings
Last update: 21-Nov-2002
by GMC; contact: reyes@arep.med.harvard.edu