NOTE: Mon/Thu meetings are restricted to lab members, rotation students, & collaborators with consent of the speaker. (This is not lab policy, but respected request of the HMS-OTL and a subset of the speakers). Guest lectures & Journal meetings are open to the scientific community. All meetings and topics are subject to change at the last minute so please check this page.
DATE
SPEAKER Title (please update your titles)
Mar 08 Mon
Christoph Dieterich & Stefan Roepcke (Guest speakers from
Germany)
Mar 11
Thu
Mar 15 Mon
Mar 18 Thu
Chen-Hsiang (Guest Speaker) Inferring
gene regulatory networks from multiple sources of data
Mar 22
Mon
Mar 25
Thu
Mar 29
Mon Tony Forster Synthesizing Biological Systems
Apr 01
Thu Gary Gao Flex Motifs
Apr 05
Mon Elvind Almass and Andre X C N Valente (Guest Speakers)
Apr 08
Thu Dat Nguyen Meeting report(s)
Apr 12 Mon
Apr 15
Thu Herbert Sauro "Functional Motifs in
Biochemical Networks"
Apr 26 Mon
Partha Kanijilal Modeling using Orthogonal Transformation
Apr 29 Thu*** Bill
Agnew Neuro seminar on alternative
splicing; Goldenson 122
May 03 Mon Allegra
Petti “Coordinating cell functions”
May 06 Thu Andrey Gorin (ORNL) “Tandem MS”(Guest Speaker)
May
10 Mon Analysis of
Genomic Data Conference 77 Ave Pasteur
May 13 Thu *** Saeed
Tavazoie,
May
17 Mon Adnan Derti
Splicing'r'Us
May 20 Thu Greg Porecca Personal Genome Sequences
May 27 Thu Esti Yager Lotem,
May
31 Mon Memorial Day
Jun
03 Thu No lab meeting (GMC in
Jun 07 Mon
German Cavelier, Genomic Information Systems Lab, Columbia Univ. "From
Computational Structural Biology to Computational Systems Biology"
Jun 10 Thu Synthetic Biology
meeting at MIT
Jun 14 Mon Kobi Benenson (Guest speaker) Molecular computer:'Smart
drug' in a test tube
Jun 17 Thu
Jun 21 Mon no meeting
Jun 24 Thu
Kyriacos Leptos MapQuant
Jun 28 Mon Dan Janse
Protein degrading drugs
Jul 1 Thu Jim Collins et al, Counters & Finite State
machines (NSF SynBio Summer challenge).
Jul 5 Mon no lab meeting
Jul 8 Thu Zhou Zhu Chip^3
Jul 12 Mon Jan Korbel (Guest Speaker)
Jul 15 Thu Ben Williams Ploidy in istu
Jul 19 Mon John Aach Imagineering
Jul
22 Thu Kun Zhang How
to do genome-wide haplotyping in 10 days
Jul 26 Mon
no lab meeting.
Jul 29 Thu Nikos
Reppas Genome and Ecosystem
engineering
Aug 02 Mon
Kavitha Venkatesan (Guest Speaker) "LSF/GRH transcription factor
family: A
Comparative Genomic Analysis of Evolution and Biological
Function"
Aug
05 Thu Patrik D’haeseleer
Aug
09 Mon
Aug 12 Thu
Aug
19 Thu Dana Pe’er Lymphoid cell signaling; inferring
causal regulatory relations
Sep
09 Thu Natasha Novikov Measures & models of in
situ chromosomal geometry in nuclei
Sep
13 Mon Daniel Segre
Optimal Regulation
Sep 16 Thu
No lab meeting (Roshashana)
Sep 20 Mon Xinshu (Grace)
Xiao (guest speaker) New System Identification Methods for Effective Probing of
Physiological and Biological Systems.
Sep 23 Thu Farren Isaacs (Guest
Speaker) "Genetic Modules:
Autoregulatory Networks & Riboregulators"
Sep 27 Mon Peter Kharchencko The search for the universal metabolite t6A
Sep 30 Thu*** Synthetic
Biology Meeting (Time is at
11:am)
Oct
14 Thu Even Forland
(Guest Speaker) Artificial
Photosynthesis
Oct
18 Mon Chris Varma
The Pharmaceutical-Industrial Complex
Nov
01 Mon Jay Shendure
The Library of
Nov
04 Thu Matthew Wright 4D string theory of chromosomes
Nov
15 Mon Nathan Walsh Counting up to one with DNA
Nov 16 Tue****Lab Meeting
with Chancellor Wrighton of WashU **(
Nov
18 Thu Sasha Wait
Bio-quantum-computing
Nov
22 Mon Madeline Price
Methyl-epigenomics
Nov 25 Thu No Lab Meeting
Nov
29 Mon Wayne Rindone,
Aaron Brandes, Jeremy Zucker
BioSPICE of Life
Dec
02 Thu Jingdong Tian Synthetic proteomes
Dec
06 Mon Dat Nguyen Gene Expression Factorization
Dec
09 Thu Jun Zhu Splicing Alternatives
Dec
13 Mon Allegra Petti
SPIN : Search for Pairwise INteractions
Dec 16 Thu No Lab Meeting
Dec
20 Mon Kyriakos Leptos A day in the life of a light
harvester
Jan
06 Thu Adnan Derti "History (of introns) & geography
(tissue-specific splicing)"
Jan
10 Mon
Jan
13 Thu Canceled
Jan
17 Mon No Lab Meeting
Jan
20 Thu Joao Magalhaes Tales told by old chimps and
whales
Jan
24 Mon Gary
Gao/Xiaoxia Lin (meeting postponed due to snow)
Jan
27 Thu Andrew Levin
(Guest Speaker) "Conformation and Pharmacology"
Jan
31 Mon No Lab Meeting
Feb
03 Thu Zhou Zhu
Mammalian Transcription
Feb
07 Mon (postponed due to DOE GtL meeting in DC)
Feb
10 Thu Greg Porreca
Go with the flow wobble sequencing
Feb
14 Mon Dana Pe’er Casual causality
Feb
21 Mon No Lab Meeting
Feb
24 Thu No Lab Meeting
Feb
28 Mon No lab Meeting
Mar
07 Mon
Mar
10 Thu****Julian Mintseris (Guest Speaker) "Structure-driven
Approaches to Protein Recognition"
Mar
14 Mon
Mar
15 Tue****Guest- Shereen Elkholy - DNA Mediated Immunization and
Plant-Derived Vaccination ** 10- 11:30am rm 335 (fish bowl)**
Mar 16 Wed DOE GtL meeting Jeremy Zucker &nsbp; The Adopt-a-genome project
Mar 17 Thu No lab meeting (already 3 this week).
Mar
21 Mon
Mar 24 Thu****Ruth Hershberg
(Guest Speaker) "Chromosomal organization is shaped by the transcription
regulatory network"
Mar
28 Mon Dana Pe’er (with Mike Chou,
Mar
31 Thu No Lab Meeting
Apr
04 Mon Rhonda Harrison
Chip^2 Data Mine Sweeping
Apr
07 Thu Madeleine Price
meC in mammals
Apr 11 Mon Michael Chou Mass Spec-ificity
Apr
14 Thu****Sarah Kummerfeld (Guest Speaker) Genome-wide
transcription factor repertoire prediction and analysis
Apr
18 Mon No Lab Meeting
Apr
21 Thu Nathan Walsh
Coli-Counter
Apr
25 Mon Joseph Chou
pre- & post-natal genomics
Apr
28 Thu
May
02 Mon Matthew Wright
Toward a 3D/4D structure of the Caulobacter genome
May
05 Thu
May
09 Mon No Lab Meeting
May 12 Thu Chris Varma human
CD44 splicing
May 16 Mon**** Maxim
Barenboim(Guest Speaker) A Neuro-Fuzzy Approach to Classification of the
Functional Effects of Human Non-Synonymous SNPs Based upon Computational
Geometry
May 19
Thu Carl Kingsford Solving Side-chain Positioning Problems Using
Mathematical Programming
May 23 Mon Abraham Rosenbaum A rolling circle
gathers no emulsion
May 26 Thu No Lab Meeting - Genetics Retreat
May 30 Mon No Lab Meeting - Memorial Day
Jun 02 Thu****Dr.
Jun
06 Mon****Ran Kafri
"Responsive Backup Circuits - a regulatory design of genetic
redundancy"
Jun 09 Thu No Lab Meeting Synthetic Virology/Biology
Conference,
Jun 13 Mon No lab
meeting Shavu'ot
Jun
15 Wed****at
Jun 16 Thu No Lab Meeting CodonDevices Meeting
Jun 17 Fri Genetics DJ Meeting
Jun 20 Mon****Haiyuan Yu (Guest Speaker) Analysis of biological networks on
a genome scale
Jun 23 Thu No lab
meeting NHGRI SeqTechDev meeting
Jun 24 Fri Genetics
Dept DJ & afterward Students & Postdocs choose speakers for next year
Jun 27 Mon Farren
Isaac rE.coli & taRNAs
Jun 30 Thu No Lab Meeting (National Science Advisory Board
for Biosecurity, NSABB Conference,
Jul 04 Mon No Lab Meeting
Jul
07 Thu No Lab Meeting
(JASON Summer Study)
Jul
11 Mon
Jul 14 Thu Guo Hong Feng (Guest speaker) “Screening small molecules to inhibit
protein-protein interactions”
Jul 18 Mon Aaron Brandes & Xiaoxia Lin "Metabolic Network Identification using Mixed Integer
Linear Programming”
Jul 21 Thu No lab meeting
Jul 25 Mon Sasha Wait Competition in Synthetic &
Artificial Biology
Jul 28 Thu
Aug 02 Tue****
Aug 04 Thu Dan Janse
Dimerizing for degradation
Aug 08 Mon Michelle Kuykendal and
Yetunde Ibrahim
Aug 11 Thu DOE GTL Meeting MIT 48-308
Prochlorococcus Diel Cycle Jamboree
Aug 15 Mon No lab meeting
Aug 18 Thu
Aug 22 Mon
Mirko Palla Genetomic promototypes
Aug 25 Thu Michael Strong (guest)
Genomes, Maps, and Modules: Navigating the M. tuberculosis Proteome
Aug 29 Mon No lab meeting
Sep 01 Thu Matt Wright Thesis MIT
6-321
Sep 05 Mon No Lab Meeting (Labor Day)
Sep 08 Thu
Sep 12 Mon Joao Magalhaes
Designing Methuselah Mice
Sep 15 Thu Wayne Rindone Secure Web
CAD-PAM
Sep 19 Mon Zeev Smilansky (guest from
Animal Cell Metrology) Proteome readout with ribosomal FRET
Sep 21 Wed DOE GtL monthly meeting
Sep 22 Thu No lab meeting
Sep 26 Mon No lab meeting
Sep 29 Thu No lab meeting
Oct 03 Mon
Oct 06 Thu No lab meeting
Oct 10 Mon No Lab Meeting (Columbus
Day)
Oct 13 Thu Peter Kharchenko Metabolichromosome
Oct 17 Mon No lab meeting due to GSAC
meeting
Oct 20 Thu No lab meeting due to ICSB
meeting
Oct 24 Mon Zhou Zhu human p63
DNA binding
Oct 27 Thu No lab meeting
Oct 31 Mon No lab meeting
Nov 03 Thu No lab meeting due to CEGS
meeting
Nov
07 Mon Kyriakos Leptos
Just-in-time in slow motion
Nov 10 Thu Matthew Wright
Comparative Origamomics
Nov 14 Mon Sasha Wait From Free
Software to Free Community
Nov 16 Wed DOE GtL Monthly Meeting 12-2
PM
Nov 17 Thu
Xiang Zhang
(guest speaker) RNA splicing
Nov 21 Mon Adnan Derti
Ultraconservative views on evolution
Nov 24 Thu No lab meeting (Thanksgiving Day)
Nov 28 Mon
Madeleine Price Epi-stem-ology
Dec 01 Thu No lab meeting (ALS &
Orfeome meetings)
Dec
05 Mon Mike Chou
Massively
parallel masses
Dec 08 Thu No lab meeting .
Dec 12 Mon
Ciliary and basal body proteome.
Dec 15 Thu
No lab meeting (UC Berkeley NSF Meeting)
Dec 19 Mon Lilach Friedman (Guest
Speaker) "As Much As a Pair Can Hold"
Dec 22 Thu
No lab meeting
Dec 26 Mon No lab meeting (Christmas Holiday
Dec 29 Thu
No lab meeting (Christmas Holiday)
Jan 02 Mon No lab meeting (New Year’s)
Jan 05 Thu No lab meeting (GSA meeting)
Jan 09 Mon
Ting Wang (Guest Speaker) Combining
Phylogenetic data and Network
Topology to identify Regulatory
Motifs.
Jan 12 Thu
Greg Porreca Toward a human genome sequence
Jan 16 Mon No lab Meeting (Martin
Luther King Day)
Jan 18 Wed Nick
Reppas & Ben Kirkup DOE GTL Lab
evolution of Growth Rate
Jan 19 Thu
Noel Goddard Lost in
translation
Jan 23 Mon Abraham Rosenbaum
Nanogrids for gigabases
Jan 26 Thu Kun Zhang Single
chromosomes speak out
Jan 30 Mon Nikos Reppas Genomengineering
Feb 02 Thu Chris Varma Human cancer splicing
counts
Feb 06 Mon Shawn Douglas Long
stiff DNA rods
Feb 09 Thu Dana Pe'er Promoting promoters
Feb 13 Mon
Joseph Chou
The child in mom's veins
Feb 16 Thu Dat Nguyen Proteanomics
Feb 20 Mon No Lab meeting (President’s
Day)
Feb 23 Thu Mark Umbarger The shape of coli's mortal coil
Feb 27 Mon
Genetics Dept.
Seminars Wed at noon in WAB 563
(except as noted
***)
Church lab lecture tour
Jan 25-30, 2001 World
Economic Forum 2001 in Davos (
Feb 22, 2001 Showcase meeting:
Where do we go from HUGO? at The Pierre in NYC (
Mar 13, 2001. Experiencing
the Frontiers of Biomedical Technology HST Symposium, Boston, MA (
Apr 21-24, 2001 Recomb 2001 in Montreal (
May 8, 2001 CGR lecture in
Cambridge, MA (
May 24, 2001
Mass. Biotech Council Science Symposium session "MINING THE
GENOME", 2:45-4:30pm at the Westin Copley Place, Boston. (
June 22, 2001 DIMACS Workshop on Integration of Diverse Biological Data (Tzachi Pilpel)
Jun 13-14, 2001 Armenise Symposium: Cancer
Biology & Post-Genomics Grand Hotel Borromee, Lago Maggiore in Italy (
Jul 21-25, 2001 ISMB 2001 in Copenhagen, Denmark (Tzachi Pilpel)
Aug 23-26, 2001
Santa Cruz Human Genome Workshop at UCSC (
Sep 12, 2001 New England Bioinformatics Group (NEBiG)
and Abbott Bioresearch Center: Microarray Data Analysis Toward Understanding
Autoimmunity. Worcester, MA (
Sep 13-15, 2001 PNL, SDSC, and Sun:
Computational Challenges In The Post-Genomic Age-II. Durham, NC. (
Nov 27-Dec 1,
2001 DARPA BioCOMP meeting Monterey, CA (
Dec 1, 2001 E.coli resources meeting, Chicago, IL (Doug Selinger)
Dec 17, 2001 Biomedical
Informatics Grand Rounds Mon 11 AM Children's Hospital, Boston (
Jan 27-31, 2002 DOE Genome Meeting, Santa Fe, NM (Rob Mitra & Wayne Rindone)
Jan 31,
2002 Whitehead Institute
Functional Genomics Seminar Series (
Feb 12, 2002 MIT Mathematics Dept: "The challenge of integrating informational, spatial, temporal, and optimal models: toward synthetic biology.
Feb 14,
2002 BWH Clinical
Pathology Conference Series: "Relating Genetic differences to Gene
Expression and Cell Proliferation: Technologies and Models." (
Feb 26,
2002 Harvard Inst.
Medicine Genomics Center 1st floor Conference at Noon: "Genome-wide
measures and system models for protein interactions and cell
proliferation." (
Feb 27,
2002 HMS Cannon Room
4:00 to 6:00 PM BBS minisymposium on Functional Genomics & Informatics (
Mar 18-19, 2002 Gaithersburg, MD DOE Genomes to Life Mathematics Workshop (Matthew Wright)
Mar 23, 2002 E. coli Model Cell Consortium (Emc^2) meeting (Doug Selinger).
Apr 1, 2002 BU Bioinformatics Dept,
"Genome systems models and measures connecting genotype with
phenotype." (
May 1, 2002 at 10:50 AM Boston CHI Macro Results Through
MicroArrays Keynote Presentation: "Array Quantitation for Modeling
Mutations Affecting RNA, Protein Interactions, and Proliferation" (
May 22-24,
2002 Washington DC DARPA IPTO
Bio-Computation PI Meeting (
Jun 4, 2002
Archemix at 11:00 AM "Polonies" (
Jun 11, 2002
Yale at 4:00 PM "Systems models and measures connecting genotype to
phenotype" (
Jun 19, 2002 Harvard CGR at 3 PM.
"From proteomics to a highly interconnected model of replication and
selection." (
Jun 24-28, 2002 MIT
20.01s Bioinformatics: Principles, methods and applications. (
July 7-12, 2002
Vienna 14th International
Organization for Mycoplasmology (IOM) Congress (
July 23, 2002
Sequencing and resequencing the biome. Pooks Hill Bethesda Marriott (
July 26, 2002
Fri at 9:00 AM Humboldt Univ. & Boston Univ. Bioinformatics
workshop in Boston. Keynote: "Biosystems Measures and Models of
Reproductive Fitness" (
July 28-Aug2 GRC Genomics &
Structural/Evolutionary Bioinformatics Mount Holyoke (
July 30-Aug 4 Yeast meeting 2002 Madison, WI (Aimee Dudley)
Aug3-6 ISMB02 & SIGSIM02 Edmonton (Matt Wright)
Sept 4, 2002
Serono (
Sept 13, 2002 DNA Microarrays in Biology and Medicine Lausanne, Switzerland (Doug Selinger)
Oct 2, 2002 Genome Sequencing and
Analysis Conf. (GSAC) Boston (
Nov. 8,
2002 University of
Massachusetts Boston, Genome "Systems models: Genotype to Phenotype" (
Dec 9-11, 2002 DARPA NSF San Diego, CA (Daniel Segre)
Dec 13-15, 2002 ICSB-3 Karolinska
Institutet, Stockholm, Sweden (
Feb 7, 2003 Univ. of Texas Biomedical
Sciences 7th
Mini-Symposium, Houston. Keynote (
Feb 10-12, 2003 First DOE Genomes to Life Workshop,
Arlington, VA, (
Mar 30 - Apr2,
2003 New Horizons in Genomics
(DOE), Santa Fe, NM (
Apr 11-12, 2003 The
Future of Human Nature, Boston (
May 13-16, 2003 DARPA/NSF BioComp meeting, Ft. Lauderdale, FL (Wayne Rindone)
May 17-18, 2003
Recomb 2003 DNA Sequencing
Technologies and Computation, Stanford, CA (
May 18-22, 2003.
American Society for Microbiology (ASM) Colloquium
215 on Systems Microbiology. Washington DC convention center. 4D and Optimality Models of
Replicative Fitness (
Aug 26-28, 2003 Genomics and
Health: A Practical Guide to the Genomics Revolution Boston, MA (
Sep 16-19, 2003.Third
Virtual Conference on Genomics and Bioinformatics, Access Grid locations
(
Oct 22, 2003.
10:30 AM Novartis
Institutes for BioMedical Research Boston. Models and Measures of Single
Molecules in Human Physiology (
Feb 4, 2004. 9:30 AM. Bio-SPICE Design & Synthesis of useful replicating
biosystems. DARPA Meeting Adelphi, MD (
Feb 5, 2004. 4 PM. Measures,
models and synthesis of "optimal" replicating biosystems MIT
Biological Engineering Divis. (
Mar 1-2, 2004. DOE GtL
meeting. Marriott Wardman Park, Washington, DC (
Mar 3-4, 2004. MolTools meeting
Stockholm (
Mar 10,2004 TJU
CBAT, Phildelphia (
May 7,8, 2004. HMS Systems
Biology Retreat."Optimality in Synthetic Biosystems" (
May 10-11, 2004. International
Conference on Analysis of Genomic Data, The Conference Center at HMS, 77 Ave.
Pasteur, Boston. Modeling time-series and perturbation analyses for RNA and
proteomics data streams. (
May 11, 2004 at 4-6 PM. CIMIT,
Boston. New Tools for Genome Engineering (
May 12, 2004 Broad
Inst. Seminars Computational Biology. Cambridge,MA (
May 14, 2004 ACLU Genomics Technology and Genetic Databases. Boston, MA (
May 20, 2004 Bauer Center, Cambridge, MA (
May 24, 2004 Dept.
of Genome Sciences, Univ. Washington, Seattle, WA (
Jun 2, 2004 Dept.
of Genetics. Washington Univ., St. Louis, MO (
Jun 10-12,2004 Synthetic Biology.
MIT, Cambridge MA (Geo.Church & Jingdong Tian)
Jun 22-23,2004 BU Bioengineering retreat, Falmouth MA (George Church)
Aug 17, 2004 ISB Seminar (
Oct 1-3, 2004 SAGE2004
"Decoding the Omes" meeting, Boston Fairmont Copley Plaza Hotel.
Keynote: "New technologies and models for integrative systems
biology." (
Oct 4, 2004 Berkeley
Synthetic Biology Dept. 100 Lewis Hall at 4 PM. (
Oct 6, 2004 U.
Wisconsin Omics Seminar Series. (
Oct 12-13, 2004 DARPA BioComp. (
Oct 20-22, 2004 NHGRI CEGS
Annual meeting. (
Oct 22,2004 SACNAS meeting
"Personal Genomics and Synthetic Biology" (
Nov 9,2004 Univ. Texas Austin (
Nov 8, 2004 Amer.
Inst. of Chemical Engineers (AIChE) Symposium on "Bioinformatics and
Functional Genomics" , Austin TX, (
Dec 1, 2004 MGH-E Cancer
Center (
Jan 4-5, 2005. NHGRI Genome sequencing of existing cohorts Bethesda, MD (
Feb 1, 2005. Annual MITRE Microbial Workshop, Washington,
DC. (Church)
Feb 6-9, 2005. Annual DOE GtL Workshop,
Wardman Park Marriott Hotel, Washington, DC. (Church, Leptos, Martiny,
Sullivan, Zhang)
Mar 17-20, 2005 Systems Biology,
CSHL (
Mar 7-9, 2005 2nd
International Immunoinformatics Symposium BU, Boston (
Apr 8-12, 2005 Systems
and Biology (X4) Keystone, Colorado (
Apr 13, 2005 Duke
University Genomics "Personal Genome/Transcriptome Sequencing"(
May 4, 2005 CHI
Microarrays in Medicine Meeting, Boston WTC (
May 9, 2005 Diversa, San Diego
(George Church)
May 10, 2005 Caltech
(George Church)
May 14-17, 2005 RECOMB,
Boston (George Church, et al.)
May 26-7, 2005 HMS Genetics Retreat,
Newport, RI (all)
Jun 9-10, 2005 Conference on synthetic biology, virology MITRE, Tyson's Corner, VA (
Jun 11-15, 2005 Environmental
Microbial Genomics Workshop, Shanghai (
Jun 22-23, 2005 NHGRI Seq-Tech meeting, Boston (George Church,
Jun 30-Jul 1, 2005 NSABB(George
Church)
Jul 7, 2005 JASON
Summer Study - Bioengineering, San Diego (George Church)
Jul 20-22, 2005 Santa Barbara (George Church)
Jul 21-24, 2005 CSHL Gilbert
Symposium (George Church)
Sep 23, 2005 Howard
Goodman Symposium Boston (George Church)
Sep 25-26, 2005 NRC DOE GTL Review meeting, DC (George Church)
Sep 25-27, 2005 Sloan/JCVI/MIT Biosecurity meeting, Cambridge, MA (George
Church)
Sep 30, 2005 Personal Health
Information (PHI) Workshop, New York City (George Church)
Oct 17-19 GSAC Genomes,
Medicine and the Environment Hilton Head, SC (George Church) Design,
Synthesis, Evolution & Sequencing of rE.coli genomes
Oct 19-24 ICSB-6,
Boston, MA (Aach, Church, Lin, et al.) Shifting between reverse and forward
engineering
Nov 1-3, 2005 NHGRI CEGS meeting, Yale (Church, Porreca, et al).
Nov 5-6, 2005 iGEM
(Genetically Engineered Machines) competition Jamboree, Boston (all)
Nov 9-12, 2005 8th
Annual Conference on Computational Genomics, Cambridge MA (George Church)
Toward computing & interpreting $1000 human sequences
Nov 14, 2005 Symposium
in SNP technology and bioinformatics, Uppsala University (
Nov 15, 2005 U. Chicago (George Church)
Dec 1, 2005 2:00 PM ALS Technologies Meeting, Cambridge (George Church)
Dec 1, 2005 6:15 PM Orfeome DFCI
Boston (George Church)
Dec 8, 2005 IABMR Annual Scientific Meeting at the Forsyth Institute, Boston (George Church)
Dec 13-15, 2005 UC Berkeley NSF Synthetic Biology Meeting (George Church)
Jan 4, 2006 HPCGG
Proteomics Cambridge MA (George Church)
Jan 5-8, 2006 Genetics
Society of America, San Diego "The Genetics of Synthetics" (
Feb 7-8, 2006 2nd NHGRI DNA sequencing technology development grantees
meeting Marco Island, FL (
Feb 13-15, 2006 DOE GtL (Nina
Lin, Kun Zhang, George Church, et al.)
Mar 7-8, 2006 Bioethics conference, NYC (George Church)
Mar 15, 2006 Vanderbilt Univ (George Church)
Apr 23-24, 2006 ISB
Symposium, Seattle (George Church) Personal Genomics & Systems
Biotechnology
May 3, 2006 Procter & Gamble Biosystems Modeling Symposium (George
Church)
Jun 12, 2006 The
Chilren's Hospital Neuroscience Seminar (George Church)
*****************************************************************************
Friday
D/J Seminars at Noon in WAB 563
Feb 15/02
Mar 08/02
Apr 05/02 Kyriacos Leptos
Apr 26/02 Yonaton
Grad
May 03/02 Daniel Segre
May 31/02 Martin Steffen
Church Lab Journal Club
************** NOTE TIME
AND ROOM CHANGE Mudd 3rd floor
Tues noon ************
The purpose of
the Church Lab journal club is to explore various topics related to functional
genomics and computational biology.
Suggested formats for presentations include analyses of relevant journal
articles (current or historical), tutorials (software packages, web sites, statistical
algorithms), brain-storming sessions on how to apply new techniques within the
lab, etc.
Wednesday
biological modeling journal discussions in Mudd 3rd floor conference room. Journal articles should be
distributed 1 week in advance.
Attendance is open to all.
DATE SPEAKER FOOD TOPIC
January 14, 00
Saeed
Priya
Introduction to Clustering
January 28, 00
John
Aimee
Single Nucleotide Polymorphisms
February 11, 00
Barak
Felix
Modeling Baterial Chemotaxis
February 25, 00
Tzachi
Paula
BLAST Theory
March 10, 00
Paula
Tzachi
AlignACE
March 24, 00
Aimee
Allegra Evolution of
the yeast Mitochondrial genome
April 7, 00 Abby’s
Thesis Defense
April 21,
00
--------------------------
May 5, 00 Priya
Nick
FRAP/FLIP analysis
May 26, 00
Adnan/Itai
Dan
Gene fusions in S. cerevisiae
June 9, 00
Doug
Rob
Artificial life
June 23, 00
Jeremy
Vasu
Genetic toggle switches
July 7, 00
--------------------------
July 21, 00
Tzachi
Jeremy Matlab
tutorial - I
July 28, 00
Tzachi
Priya
Matlab tutorial - II
Sept 22,
00 Nick
Aimee
Flux Ratio Analysis
Oct 20, 00
Post-doc candidate for the Roth lab
Nov 3, 00 Cheng
Li Barak Model
based analysis of oligonucleotide DNA arrays
Nov 17, 00 Atul
Butte Novel
bioinformatics techniques in functional genomics
Dec 1, 00
Jadwiga Bienkowska
A bayesian approach to protein fold recognition
Jan 12, 01 Fri
Rob Mitra Proteomics
Jan 26, 01 Fri
WAB 4th floor conf. room
Patrik Robustness SFI , Philip Ball.
Feb 9, 01 Fri
Room C212 Savageau's genetic regulation papers
Feb 20, 01 Tue
11:30 Mudd 304A Overview of modeling methods: Stochastic, Bayesian,...
Mar 9, 01 Fri
2:00 Room C212 Nik Metabolic Control Analysis
Mar 20, 01 Tue
11:30 Mudd 304A Metabolic
(& small world) Networks
Apr 3, 01 Tue
11:30 Mudd 304A Modularity : Wagner, G.P. and L. Altenberg 1996. Complex
adaptations and the evolution of evolvability. Evolution
50:967-976 Arnone MI, Davidson EH 1997. The hardwiring of development:
organization and function of genomic regulatory systems. Development
1997 May;124(10):1851-64
Apr 17, 01 Tue
11:30 Mudd 304A Peter K
Petri Nets
May 1, 01 Tue
11:30 Mudd 304A Stochastics
II
May 15, 01 Tue
11:30 Mudd 304A Differential
Equation models
May 29, 01 Tue
11:30 Mudd 304A Integrated RNA
& proteomics Ideker et al.
Jun 12, 01 Tue
11:30 NE43-518
Jun 26, 01 Tue
11:30 Mudd 304A
10-Jul-2001 Tue
11:30 Mudd 304A Tzachi
Pilpel: Regulatory element detection using correlation with expression. Nature
Genet. 27, 167-171 (2001). Bussemaker, et al.
24-Jul-2001 Tue
11:30 Mudd 304A Peter & Patrik: Stochastic differential equations (&geometric
Brownian Motion) (1) Tomas
Bjork(2)
Jan Nygaard Nielsen(3)Peter
Laurence
21-Aug-2001 Tue
11:30 Mudd 304A Peter : complex networks by the
Barabasi group
29-Jan-2002 Tue
11:30 Mudd 304A Patrik : Reka Albert and Barabasi's review on "Statistical
mechanics of complex networks" Chapter VI (small-world networks) and
VII (the scale-free model)
5-Feb-2002 Tue
11:30 Mudd 304A Systematic
Genetic Analysis with Ordered Arrays of Yeast Deletion Mutants Hin Yan Tong
et al, Science Dec 14 2001: 2364-2368.
5-Mar-2002 Tue
11:30 AM Mudd 304A Whole-istic
Biology Lisa Chong and L. Bryan Ray Science Mar 1 2002: 1661. Systems
Biology: A Brief Overview Hiroaki Kitano Reverse
Engineering of Biological Complexity Marie E. Csete and John C. Doyle
20-Mar-2002 Wed
10:00 AM Mudd 2nd floor conference (note new time!) A Genomic
Regulatory Network for Development (Davidson et al Science 2002 ; more
detailed background: Genomic
Cis-Regulatory Logic (Science 1998) , Yuh et al Development
3-Apr-2002 Wed
10:00 AM Mudd 2nd floor conf: same topic as last time plus: Cis-regulatory logic
in the endo16 gene: switching from a specification to a differentiation mode of
control. Yuh et al (2001) Development 128 (5): 617
30-Apr-2002 Wed
10:00 AM Mudd 2nd floor conf (202): A preprint from Reka Alberts (see Patrik)
and The segment polarity
network is a robust developmental module. von Dassow, G. et al. Nature 406,
188-192 (2000)
15-May-2002 Wed
10:00 AM Mudd 2nd floor conf (202):
John : Topological &
causal structure of the yeast transcriptional regulatory network N.
Guelzim, S Bottani, P Bourgine & F Kepes. Nat. Gen 31:60-63.
Daniel : Network motifs in the
transcriptional regulation network of Escherichia coli SS Shen-Orr, R Milo,
S Mangan, U Alon. Nat Gen 31:64-68.
Debra : The identification of
functional modules from the genomic association of genes Berend Snel, Peer
Bork, and Martijn A. Huynen PNAS 99(9):5890-5895
Patrik : Reverse engineering
gene networks using singular value decomposition and robust regression M.
K. Stephen Yeung, Jesper Tegnr, and James J. Collins. PNAS 99:6163-6168
21-Jan-2003, Tue
10-11:30 am in the Folin Wu room (next to Canon conference room). Markus W.
Covert and Bernhard Palsson Transcriptional
Regulation in Constraints-based Metabolic Models of E. coli J. Biol. Chem.
2002 277:28058-28064
8-Jul-2003 Tue
noon. Mudd 3rd floor conference.
Pfeiffer T,
Schuster S, Bonhoeffer S. Cooperation and competition in the evolution of
ATP-producing pathways. Science.
2001 Apr 20;292(5516):504-7. Erratum Science 2001 Aug 24;293(5534):1436. Supporting
info.
Pfeiffer T,
Bonhoeffer S. An evolutionary scenario for the transition to undifferentiated
multicellularity.Proc
Natl Acad Sci U S A. 2003 Feb 4;100(3):1095-8 . Supporting
Info
22-Jul-2003, Tue
Noon-2pm Mudd 3rd floor conference room. Westerhoff HV, Hellingwerf KJ, Van Dam
K. Thermodynamic
efficiency of microbial growth is low but optimal for maximal growth rate. Proc
Natl Acad Sci U S A. 1983 Jan;80(1):305-9
*************************
Old labmeeting
lists: Nov98-Apr99
, Jul99-Dec99
, Dec99-Aug00
, Jul00-Dec00,
Nov00-May01,
Apr01-Oct01
, Apr01-Dec02
, May02-Feb03
, May02-Aug03
, Jul03-Dec04
, Mar04-Aug05
.
A list of Genome related Meetings
Last update:
5-Aug-2005 by GMC.